miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3721 3' -63.6 NC_001650.1 + 125257 0.66 0.631146
Target:  5'- cGGgCCCGuGcCAGaagccgcCGCCGCCUCCCg -3'
miRNA:   3'- -UCgGGGC-C-GUCcaa----GUGGCGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 112953 0.66 0.631146
Target:  5'- cGCCUCcacgGGCugguacaggGGGUUCuCCGCCcCCCUg -3'
miRNA:   3'- uCGGGG----CCG---------UCCAAGuGGCGGaGGGA- -5'
3721 3' -63.6 NC_001650.1 + 44913 0.66 0.631146
Target:  5'- gGGUCCUGGCAGGguaGCUgugaGCUUCUCa -3'
miRNA:   3'- -UCGGGGCCGUCCaagUGG----CGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 52678 0.66 0.631146
Target:  5'- cGCCCCaGCAGGg--ACUuggGCCUCUCg -3'
miRNA:   3'- uCGGGGcCGUCCaagUGG---CGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 50745 0.66 0.631146
Target:  5'- gGGCCgCGGUGGG--CGCCGCCaccaCCUg -3'
miRNA:   3'- -UCGGgGCCGUCCaaGUGGCGGag--GGA- -5'
3721 3' -63.6 NC_001650.1 + 159706 0.66 0.631146
Target:  5'- gGGCagCCgGGCAGGagCaggACCGCCaCCCUg -3'
miRNA:   3'- -UCG--GGgCCGUCCaaG---UGGCGGaGGGA- -5'
3721 3' -63.6 NC_001650.1 + 111514 0.66 0.621478
Target:  5'- uGGCCCUcucGUGGGUggCgACCGCCUgCCCa -3'
miRNA:   3'- -UCGGGGc--CGUCCAa-G-UGGCGGA-GGGa -5'
3721 3' -63.6 NC_001650.1 + 83493 0.66 0.621478
Target:  5'- -cCCCCGGCAc---CACC-CCUCCCUc -3'
miRNA:   3'- ucGGGGCCGUccaaGUGGcGGAGGGA- -5'
3721 3' -63.6 NC_001650.1 + 52117 0.66 0.621478
Target:  5'- cGGCCCguaggGGUAGGgggUCcCCGgCUCCCc -3'
miRNA:   3'- -UCGGGg----CCGUCCa--AGuGGCgGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 126261 0.66 0.621478
Target:  5'- cGCCCCGGC-----CG-CGCCUCCCg -3'
miRNA:   3'- uCGGGGCCGuccaaGUgGCGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 24963 0.66 0.621478
Target:  5'- gGGCCCagGGCacccaccugGGGUUCgggGCCcCCUCCCc -3'
miRNA:   3'- -UCGGGg-CCG---------UCCAAG---UGGcGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 102215 0.66 0.621478
Target:  5'- -aCUCCaGGCA-GUUCuuucagggaGCCGCCUCCCa -3'
miRNA:   3'- ucGGGG-CCGUcCAAG---------UGGCGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 135802 0.66 0.610851
Target:  5'- gGGCCCCcaccauGGCguugaagGGGUUgccgcagggCACCGuCCUCCCc -3'
miRNA:   3'- -UCGGGG------CCG-------UCCAA---------GUGGC-GGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 12162 0.66 0.602169
Target:  5'- cGCCgCGGCAcagacaagaUgGCCGCCUCCCc -3'
miRNA:   3'- uCGGgGCCGUcca------AgUGGCGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 178869 0.66 0.602169
Target:  5'- cGCCgCGGCAcagacaagaUgGCCGCCUCCCc -3'
miRNA:   3'- uCGGgGCCGUcca------AgUGGCGGAGGGa -5'
3721 3' -63.6 NC_001650.1 + 63687 0.66 0.602169
Target:  5'- cGCCCU-GCAGG-UCGCCGgCgCCCa -3'
miRNA:   3'- uCGGGGcCGUCCaAGUGGCgGaGGGa -5'
3721 3' -63.6 NC_001650.1 + 68903 0.66 0.599278
Target:  5'- cGGCCaugcgCGGCGGGUacacguaccagcgcUCuacGCCGCCcCCCUc -3'
miRNA:   3'- -UCGGg----GCCGUCCA--------------AG---UGGCGGaGGGA- -5'
3721 3' -63.6 NC_001650.1 + 90283 0.66 0.592541
Target:  5'- cGGCCUCGGCGG--UCG-CGCCaCCCUg -3'
miRNA:   3'- -UCGGGGCCGUCcaAGUgGCGGaGGGA- -5'
3721 3' -63.6 NC_001650.1 + 140707 0.66 0.592541
Target:  5'- aGGCgCUGGCuccuGG--CGCCaGCCUCCCUc -3'
miRNA:   3'- -UCGgGGCCGu---CCaaGUGG-CGGAGGGA- -5'
3721 3' -63.6 NC_001650.1 + 69456 0.66 0.582939
Target:  5'- cGGCCCgGGCccgg-CACCGCCaUUCCUc -3'
miRNA:   3'- -UCGGGgCCGuccaaGUGGCGG-AGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.