miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3721 5' -51.4 NC_001650.1 + 105563 0.66 0.994981
Target:  5'- aGGccGUggCGGUccagGAACGCCUCGgGCa -3'
miRNA:   3'- aCUucCAuaGCCA----CUUGUGGAGCgUG- -5'
3721 5' -51.4 NC_001650.1 + 92173 0.66 0.994981
Target:  5'- aUGAAGGcggUGGUGGgcaGCACCUC-CAa -3'
miRNA:   3'- -ACUUCCauaGCCACU---UGUGGAGcGUg -5'
3721 5' -51.4 NC_001650.1 + 120501 0.66 0.994905
Target:  5'- cUGAGGGUGgccuccuUCGGgGAGCagguGCCUCuggGCGCc -3'
miRNA:   3'- -ACUUCCAU-------AGCCaCUUG----UGGAG---CGUG- -5'
3721 5' -51.4 NC_001650.1 + 50296 0.66 0.993273
Target:  5'- cGggGGagaCGGcGAGCGCCcaaagCGCGCc -3'
miRNA:   3'- aCuuCCauaGCCaCUUGUGGa----GCGUG- -5'
3721 5' -51.4 NC_001650.1 + 25086 0.66 0.993273
Target:  5'- ---uGGUGcUGGUGGuGCugCUCGUACa -3'
miRNA:   3'- acuuCCAUaGCCACU-UGugGAGCGUG- -5'
3721 5' -51.4 NC_001650.1 + 19794 0.66 0.993273
Target:  5'- cGggGGUcUCuGGUaGAgcACGCCcCGCGCc -3'
miRNA:   3'- aCuuCCAuAG-CCA-CU--UGUGGaGCGUG- -5'
3721 5' -51.4 NC_001650.1 + 13253 0.66 0.99226
Target:  5'- gGGAGGc-UgGGUGGAgggUACCUCGCGg -3'
miRNA:   3'- aCUUCCauAgCCACUU---GUGGAGCGUg -5'
3721 5' -51.4 NC_001650.1 + 97866 0.66 0.99226
Target:  5'- -uGGGGUAgggGGUGGucuuCACCUCGgGCu -3'
miRNA:   3'- acUUCCAUag-CCACUu---GUGGAGCgUG- -5'
3721 5' -51.4 NC_001650.1 + 179960 0.66 0.99226
Target:  5'- gGGAGGc-UgGGUGGAgggUACCUCGCGg -3'
miRNA:   3'- aCUUCCauAgCCACUU---GUGGAGCGUg -5'
3721 5' -51.4 NC_001650.1 + 27609 0.66 0.99226
Target:  5'- aGAGGG---CGGUGAugGCCU-GCAg -3'
miRNA:   3'- aCUUCCauaGCCACUugUGGAgCGUg -5'
3721 5' -51.4 NC_001650.1 + 69610 0.66 0.99226
Target:  5'- -aGAGGUGuccUCGGUGGccaGCACCUgcCGuCACc -3'
miRNA:   3'- acUUCCAU---AGCCACU---UGUGGA--GC-GUG- -5'
3721 5' -51.4 NC_001650.1 + 61906 0.66 0.991129
Target:  5'- gGAAGGcggccgCGGcGGccaGCugCUCGCGCg -3'
miRNA:   3'- aCUUCCaua---GCCaCU---UGugGAGCGUG- -5'
3721 5' -51.4 NC_001650.1 + 132890 0.66 0.991129
Target:  5'- gGGAGGUGguggaggCGGUG-GCGCC-CGCu- -3'
miRNA:   3'- aCUUCCAUa------GCCACuUGUGGaGCGug -5'
3721 5' -51.4 NC_001650.1 + 22361 0.67 0.989873
Target:  5'- cUGggGGUGgugggcagCGGgGAGgACCcguUCGCGCu -3'
miRNA:   3'- -ACuuCCAUa-------GCCaCUUgUGG---AGCGUG- -5'
3721 5' -51.4 NC_001650.1 + 92074 0.67 0.989873
Target:  5'- gGGAGGUGU---UGAGCAgCUgGCACa -3'
miRNA:   3'- aCUUCCAUAgccACUUGUgGAgCGUG- -5'
3721 5' -51.4 NC_001650.1 + 61253 0.67 0.989873
Target:  5'- gUGGAGGg--CGGUGGcCugCUccagcCGCGCg -3'
miRNA:   3'- -ACUUCCauaGCCACUuGugGA-----GCGUG- -5'
3721 5' -51.4 NC_001650.1 + 114896 0.67 0.989873
Target:  5'- gUGGAGGggGUCGcGcgGGACcgGCCUgCGCGCg -3'
miRNA:   3'- -ACUUCCa-UAGC-Ca-CUUG--UGGA-GCGUG- -5'
3721 5' -51.4 NC_001650.1 + 68553 0.67 0.983209
Target:  5'- aUGAcGGUG-CGGUagcGGGCGCCgcgggggUCGCACg -3'
miRNA:   3'- -ACUuCCAUaGCCA---CUUGUGG-------AGCGUG- -5'
3721 5' -51.4 NC_001650.1 + 32163 0.68 0.981382
Target:  5'- aUGggGG--UCGG-GGGCggGCCUCGCGu -3'
miRNA:   3'- -ACuuCCauAGCCaCUUG--UGGAGCGUg -5'
3721 5' -51.4 NC_001650.1 + 127592 0.68 0.980956
Target:  5'- aGggGGUGgacuuuagcgaGGUGGACACCUUcauagGCAa -3'
miRNA:   3'- aCuuCCAUag---------CCACUUGUGGAG-----CGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.