miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3723 3' -59.7 NC_001650.1 + 183684 0.66 0.780165
Target:  5'- -gGCGCUgGGaggggacucuagcuAGUCCCGCCCu-- -3'
miRNA:   3'- caCGCGAgCCguu-----------UCAGGGCGGGcuu -5'
3723 3' -59.7 NC_001650.1 + 16977 0.66 0.780165
Target:  5'- -gGCGCUgGGaggggacucuagcuAGUCCCGCCCu-- -3'
miRNA:   3'- caCGCGAgCCguu-----------UCAGGGCGGGcuu -5'
3723 3' -59.7 NC_001650.1 + 144550 0.66 0.773796
Target:  5'- cGUGUGCUguaGGCAAcacCCCGCCCu-- -3'
miRNA:   3'- -CACGCGAg--CCGUUucaGGGCGGGcuu -5'
3723 3' -59.7 NC_001650.1 + 133320 0.66 0.773796
Target:  5'- -gGCGC-CgGGCGAGGggaCGCCCGAGc -3'
miRNA:   3'- caCGCGaG-CCGUUUCaggGCGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 125552 0.67 0.687669
Target:  5'- -cGCGUcccUCGGCGcacGGcCgCCGCCCGAAa -3'
miRNA:   3'- caCGCG---AGCCGUu--UCaG-GGCGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 78619 0.67 0.687669
Target:  5'- -gGCGCcgcugCGGCAGacuagcccacguGGUgCUGCCCGAGg -3'
miRNA:   3'- caCGCGa----GCCGUU------------UCAgGGCGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 22489 0.68 0.677767
Target:  5'- -gGCGCcgccCGGCAuGGGcCCCGCCuCGAGg -3'
miRNA:   3'- caCGCGa---GCCGU-UUCaGGGCGG-GCUU- -5'
3723 3' -59.7 NC_001650.1 + 91128 0.68 0.677767
Target:  5'- -gGCGCUCGGagacuGGGUCCU-CCCGGc -3'
miRNA:   3'- caCGCGAGCCgu---UUCAGGGcGGGCUu -5'
3723 3' -59.7 NC_001650.1 + 73116 0.68 0.657862
Target:  5'- gGUGgucCGgaCGGaCGAGGUCCUGUCCGAGa -3'
miRNA:   3'- -CAC---GCgaGCC-GUUUCAGGGCGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 156676 0.68 0.637878
Target:  5'- gGUGgGCUCGGCAGgcAGgCCaGCCCGu- -3'
miRNA:   3'- -CACgCGAGCCGUU--UCaGGgCGGGCuu -5'
3723 3' -59.7 NC_001650.1 + 69315 0.68 0.637878
Target:  5'- -cGCGCgcaGGCc-GGUCCCGCgCGAc -3'
miRNA:   3'- caCGCGag-CCGuuUCAGGGCGgGCUu -5'
3723 3' -59.7 NC_001650.1 + 146637 0.69 0.617877
Target:  5'- -gGCGCUCGGCcgccgCCCGCaCCGc- -3'
miRNA:   3'- caCGCGAGCCGuuucaGGGCG-GGCuu -5'
3723 3' -59.7 NC_001650.1 + 35799 0.7 0.538815
Target:  5'- cGUGCGCggCGGCc--GUCCCGCgCCa-- -3'
miRNA:   3'- -CACGCGa-GCCGuuuCAGGGCG-GGcuu -5'
3723 3' -59.7 NC_001650.1 + 147989 0.7 0.538815
Target:  5'- cUGCGCUCGGUcg---CCCGCCCc-- -3'
miRNA:   3'- cACGCGAGCCGuuucaGGGCGGGcuu -5'
3723 3' -59.7 NC_001650.1 + 92941 0.7 0.509991
Target:  5'- -gGgGCUggCGGCAAAGaccgucccCCCGCCCGAGa -3'
miRNA:   3'- caCgCGA--GCCGUUUCa-------GGGCGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 158788 0.71 0.454449
Target:  5'- -gGUGCUCGGCGucGcUCCUGCCCc-- -3'
miRNA:   3'- caCGCGAGCCGUuuC-AGGGCGGGcuu -5'
3723 3' -59.7 NC_001650.1 + 72716 0.74 0.33908
Target:  5'- cGUGCGCgcggCGGCGGGGaUCaCCaGCCCGGGg -3'
miRNA:   3'- -CACGCGa---GCCGUUUC-AG-GG-CGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 115380 0.76 0.240752
Target:  5'- -gGCGCgCGGCAc-GUCCCGUCCGAGg -3'
miRNA:   3'- caCGCGaGCCGUuuCAGGGCGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 23755 0.77 0.203631
Target:  5'- -cGCGCggggGGCGGAGaCCCGCCCGAGg -3'
miRNA:   3'- caCGCGag--CCGUUUCaGGGCGGGCUU- -5'
3723 3' -59.7 NC_001650.1 + 89583 1.05 0.002426
Target:  5'- gGUGCGCUCGGCAAAGUCCCGCCCGAAg -3'
miRNA:   3'- -CACGCGAGCCGUUUCAGGGCGGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.