miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 3' -54.8 NC_001650.1 + 115287 0.66 0.962816
Target:  5'- gCCagGGAGGggGGCgGCGUAgaGCGcUGGUa -3'
miRNA:   3'- -GGa-CCUCUa-CCGgUGCAUg-UGC-ACCG- -5'
3724 3' -54.8 NC_001650.1 + 56552 0.66 0.962816
Target:  5'- cCCUcGAGAUGGagGCGUcCACGaucaggGGCa -3'
miRNA:   3'- -GGAcCUCUACCggUGCAuGUGCa-----CCG- -5'
3724 3' -54.8 NC_001650.1 + 83636 0.66 0.962816
Target:  5'- uUCUGGGGcgGGUgAgGgACGCGgccGGCg -3'
miRNA:   3'- -GGACCUCuaCCGgUgCaUGUGCa--CCG- -5'
3724 3' -54.8 NC_001650.1 + 178874 0.66 0.959356
Target:  5'- --cGGcacagacaAGAUGGCCGCcuccccacCACGUGGCc -3'
miRNA:   3'- ggaCC--------UCUACCGGUGcau-----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 12167 0.66 0.959356
Target:  5'- --cGGcacagacaAGAUGGCCGCcuccccacCACGUGGCc -3'
miRNA:   3'- ggaCC--------UCUACCGGUGcau-----GUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 49174 0.66 0.959356
Target:  5'- gUCUGGuGuccgagGGCCGCGcGCugGccgagGGCg -3'
miRNA:   3'- -GGACCuCua----CCGGUGCaUGugCa----CCG- -5'
3724 3' -54.8 NC_001650.1 + 126526 0.66 0.959356
Target:  5'- cCCaGGAGAaGGaCCACGUcgAC-CG-GGCa -3'
miRNA:   3'- -GGaCCUCUaCC-GGUGCA--UGuGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 155600 0.66 0.959356
Target:  5'- cCCUGGA---GGCCGCGUAgu--UGGCg -3'
miRNA:   3'- -GGACCUcuaCCGGUGCAUgugcACCG- -5'
3724 3' -54.8 NC_001650.1 + 57837 0.66 0.959356
Target:  5'- uCCgGGcGGUGGCaGCG-GCACGUagGGCa -3'
miRNA:   3'- -GGaCCuCUACCGgUGCaUGUGCA--CCG- -5'
3724 3' -54.8 NC_001650.1 + 109462 0.66 0.959356
Target:  5'- gCCUGGAGA-GGCUGCucagGCucuuCGUGuGCc -3'
miRNA:   3'- -GGACCUCUaCCGGUGca--UGu---GCAC-CG- -5'
3724 3' -54.8 NC_001650.1 + 123344 0.66 0.957177
Target:  5'- uCCUGGAGGugcUGGCCuCGgccaccgaggacuuuUACACcgacgGGCg -3'
miRNA:   3'- -GGACCUCU---ACCGGuGC---------------AUGUGca---CCG- -5'
3724 3' -54.8 NC_001650.1 + 93240 0.66 0.955681
Target:  5'- gCUGGAGGUGaaCCG-GUGCgagaaccuguGCGUGGCc -3'
miRNA:   3'- gGACCUCUACc-GGUgCAUG----------UGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 52690 0.66 0.955681
Target:  5'- cCCcGGGc--GGCCACGUugacCGCGUGGg -3'
miRNA:   3'- -GGaCCUcuaCCGGUGCAu---GUGCACCg -5'
3724 3' -54.8 NC_001650.1 + 75229 0.66 0.955681
Target:  5'- uCCaGGAGGUGGuCCACagGgACG-GGCu -3'
miRNA:   3'- -GGaCCUCUACC-GGUGcaUgUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 75736 0.66 0.955681
Target:  5'- uCCaGGuAGAgGGaccCCACGcGCACGUGGUu -3'
miRNA:   3'- -GGaCC-UCUaCC---GGUGCaUGUGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 51586 0.67 0.951786
Target:  5'- aCUUGGGGAUgggggaGGCCGCcUGCAgGUugggGGCc -3'
miRNA:   3'- -GGACCUCUA------CCGGUGcAUGUgCA----CCG- -5'
3724 3' -54.8 NC_001650.1 + 162186 0.67 0.951786
Target:  5'- cCUUGGGGugggccagGGCCgggACGgGCACGcgGGCg -3'
miRNA:   3'- -GGACCUCua------CCGG---UGCaUGUGCa-CCG- -5'
3724 3' -54.8 NC_001650.1 + 57178 0.67 0.951786
Target:  5'- aUCUGG-GAUGGCUuCGUGCugGccuccacaaaGGCc -3'
miRNA:   3'- -GGACCuCUACCGGuGCAUGugCa---------CCG- -5'
3724 3' -54.8 NC_001650.1 + 24999 0.67 0.943324
Target:  5'- cCCcGGAGu--GCCugGacagGCugGUGGCc -3'
miRNA:   3'- -GGaCCUCuacCGGugCa---UGugCACCG- -5'
3724 3' -54.8 NC_001650.1 + 167050 0.67 0.943324
Target:  5'- aCCUcGGGGGUGGCCAUcu-CA-GUGGg -3'
miRNA:   3'- -GGA-CCUCUACCGGUGcauGUgCACCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.