miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 181760 0.66 0.755914
Target:  5'- aUGCCAGcgGGCcgcugggggggaagGGACGGCCccGCCC-GCUu -3'
miRNA:   3'- aACGGUU--UCG--------------UCUGCCGG--UGGGcCGA- -5'
3724 5' -59.8 NC_001650.1 + 15053 0.66 0.755914
Target:  5'- aUGCCAGcgGGCcgcugggggggaagGGACGGCCccGCCC-GCUu -3'
miRNA:   3'- aACGGUU--UCG--------------UCUGCCGG--UGGGcCGA- -5'
3724 5' -59.8 NC_001650.1 + 54190 0.66 0.749295
Target:  5'- -cGCCGgugGAGCucccgGGCCGCCCaGGCUc -3'
miRNA:   3'- aaCGGU---UUCGucug-CCGGUGGG-CCGA- -5'
3724 5' -59.8 NC_001650.1 + 114922 0.66 0.739757
Target:  5'- gUUGCCcuccaccggcuuGAGGUGGACGGuCUugCUGGCc -3'
miRNA:   3'- -AACGG------------UUUCGUCUGCC-GGugGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 182259 0.66 0.739757
Target:  5'- gUUGCUcuguGGGcCGGuuguUGGCCGCUCGGCUg -3'
miRNA:   3'- -AACGGu---UUC-GUCu---GCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 15552 0.66 0.739757
Target:  5'- gUUGCUcuguGGGcCGGuuguUGGCCGCUCGGCUg -3'
miRNA:   3'- -AACGGu---UUC-GUCu---GCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 96486 0.66 0.730127
Target:  5'- -aGCCAGAGgGGACGGgUGCU-GGCUc -3'
miRNA:   3'- aaCGGUUUCgUCUGCCgGUGGgCCGA- -5'
3724 5' -59.8 NC_001650.1 + 146846 0.66 0.720416
Target:  5'- cUGCC-GGGCGGugauUGGCCGCUCGaGCc -3'
miRNA:   3'- aACGGuUUCGUCu---GCCGGUGGGC-CGa -5'
3724 5' -59.8 NC_001650.1 + 117682 0.66 0.71944
Target:  5'- -cGCCcaggaugGAGGCguuuaucauguAGACGGCCGCCCG-Ca -3'
miRNA:   3'- aaCGG-------UUUCG-----------UCUGCCGGUGGGCcGa -5'
3724 5' -59.8 NC_001650.1 + 4719 0.66 0.768065
Target:  5'- -aGCCAugGGGCuccGGA-GGCCcuccguGCCCGGCUc -3'
miRNA:   3'- aaCGGU--UUCG---UCUgCCGG------UGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 124215 0.66 0.758734
Target:  5'- -cGCCAAAGaGGugGGCCAgaagCUGGUg -3'
miRNA:   3'- aaCGGUUUCgUCugCCGGUg---GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 106251 0.66 0.739757
Target:  5'- -aGCUugguGGGCGcGACGGCCcCUCGGUg -3'
miRNA:   3'- aaCGGu---UUCGU-CUGCCGGuGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 124385 0.66 0.768065
Target:  5'- -cGCCcauGAGCGa--GGaCCGCCCGGCc -3'
miRNA:   3'- aaCGGu--UUCGUcugCC-GGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 180345 0.66 0.758734
Target:  5'- cUGCUGAGGgGGACGcuGCCAgacCCUGGCc -3'
miRNA:   3'- aACGGUUUCgUCUGC--CGGU---GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 32038 0.67 0.706698
Target:  5'- -aGCCAAGGaccaccccaaguaAGAUGGCCACCCa--- -3'
miRNA:   3'- aaCGGUUUCg------------UCUGCCGGUGGGccga -5'
3724 5' -59.8 NC_001650.1 + 7205 0.67 0.690877
Target:  5'- cUUGCaGAGGUAGAUGGCCACguaGGUg -3'
miRNA:   3'- -AACGgUUUCGUCUGCCGGUGgg-CCGa -5'
3724 5' -59.8 NC_001650.1 + 173912 0.67 0.690877
Target:  5'- cUUGCaGAGGUAGAUGGCCACguaGGUg -3'
miRNA:   3'- -AACGgUUUCGUCUGCCGGUGgg-CCGa -5'
3724 5' -59.8 NC_001650.1 + 27757 0.67 0.699794
Target:  5'- -gGCCAGGGUGGACacuucugcccccaGGCUcacGCCCGaGCUg -3'
miRNA:   3'- aaCGGUUUCGUCUG-------------CCGG---UGGGC-CGA- -5'
3724 5' -59.8 NC_001650.1 + 62608 0.67 0.700782
Target:  5'- -gGUaGGAGUGGACgGGCCACCCgagGGCg -3'
miRNA:   3'- aaCGgUUUCGUCUG-CCGGUGGG---CCGa -5'
3724 5' -59.8 NC_001650.1 + 157473 0.67 0.700782
Target:  5'- cUGCCugGAGGCGGcGCacagccccuccaGGCCggGCCCGGCg -3'
miRNA:   3'- aACGG--UUUCGUC-UG------------CCGG--UGGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.