miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 15552 0.66 0.739757
Target:  5'- gUUGCUcuguGGGcCGGuuguUGGCCGCUCGGCUg -3'
miRNA:   3'- -AACGGu---UUC-GUCu---GCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 127371 0.66 0.739757
Target:  5'- -gGCCAAuGUAGGCccagcaagGGUCuCCCGGCg -3'
miRNA:   3'- aaCGGUUuCGUCUG--------CCGGuGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 111369 0.66 0.739757
Target:  5'- -gGCUGcAGGguGGCGGCCACCauggGGUc -3'
miRNA:   3'- aaCGGU-UUCguCUGCCGGUGGg---CCGa -5'
3724 5' -59.8 NC_001650.1 + 52392 0.66 0.739757
Target:  5'- -cGUC--GGCGGcCGGCCAccgcCCCGGCc -3'
miRNA:   3'- aaCGGuuUCGUCuGCCGGU----GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 106251 0.66 0.739757
Target:  5'- -aGCUugguGGGCGcGACGGCCcCUCGGUg -3'
miRNA:   3'- aaCGGu---UUCGU-CUGCCGGuGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 182259 0.66 0.739757
Target:  5'- gUUGCUcuguGGGcCGGuuguUGGCCGCUCGGCUg -3'
miRNA:   3'- -AACGGu---UUC-GUCu---GCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 114922 0.66 0.739757
Target:  5'- gUUGCCcuccaccggcuuGAGGUGGACGGuCUugCUGGCc -3'
miRNA:   3'- -AACGG------------UUUCGUCUGCC-GGugGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 53889 0.66 0.733989
Target:  5'- gUUGCCuGGGGCAgGuucuccucgaugaccGCGGCCAgCCUGGCg -3'
miRNA:   3'- -AACGG-UUUCGU-C---------------UGCCGGU-GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 137813 0.66 0.730127
Target:  5'- gUGagaUGGAGCGGAgggGGCCGCCgCGGCg -3'
miRNA:   3'- aACg--GUUUCGUCUg--CCGGUGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 96486 0.66 0.730127
Target:  5'- -aGCCAGAGgGGACGGgUGCU-GGCUc -3'
miRNA:   3'- aaCGGUUUCgUCUGCCgGUGGgCCGA- -5'
3724 5' -59.8 NC_001650.1 + 54122 0.66 0.720416
Target:  5'- -cGCCuugggcuuGGCGGGCGGCUcuccccccucCCCGGCc -3'
miRNA:   3'- aaCGGuu------UCGUCUGCCGGu---------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 127822 0.66 0.720416
Target:  5'- cUGCCuagcggggaAGAGC-GAgGGCgGCCCGGUUc -3'
miRNA:   3'- aACGG---------UUUCGuCUgCCGgUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 146846 0.66 0.720416
Target:  5'- cUGCC-GGGCGGugauUGGCCGCUCGaGCc -3'
miRNA:   3'- aACGGuUUCGUCu---GCCGGUGGGC-CGa -5'
3724 5' -59.8 NC_001650.1 + 117682 0.66 0.71944
Target:  5'- -cGCCcaggaugGAGGCguuuaucauguAGACGGCCGCCCG-Ca -3'
miRNA:   3'- aaCGG-------UUUCG-----------UCUGCCGGUGGGCcGa -5'
3724 5' -59.8 NC_001650.1 + 69306 0.67 0.710631
Target:  5'- -aGCC--GGUGGAgGGCaACCCGGCc -3'
miRNA:   3'- aaCGGuuUCGUCUgCCGgUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 161519 0.67 0.710631
Target:  5'- -cGCCAcguugaugaAGGUcuGGACGGCCGCCaggauggaGGCc -3'
miRNA:   3'- aaCGGU---------UUCG--UCUGCCGGUGGg-------CCGa -5'
3724 5' -59.8 NC_001650.1 + 123999 0.67 0.710631
Target:  5'- -cGCCGAGGUGGAcauCGGgaaCCACgCGGCg -3'
miRNA:   3'- aaCGGUUUCGUCU---GCC---GGUGgGCCGa -5'
3724 5' -59.8 NC_001650.1 + 22477 0.67 0.710631
Target:  5'- -gGaCgGGAGCGcGGC-GCCGCCCGGCa -3'
miRNA:   3'- aaC-GgUUUCGU-CUGcCGGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 32038 0.67 0.706698
Target:  5'- -aGCCAAGGaccaccccaaguaAGAUGGCCACCCa--- -3'
miRNA:   3'- aaCGGUUUCg------------UCUGCCGGUGGGccga -5'
3724 5' -59.8 NC_001650.1 + 157473 0.67 0.700782
Target:  5'- cUGCCugGAGGCGGcGCacagccccuccaGGCCggGCCCGGCg -3'
miRNA:   3'- aACGG--UUUCGUC-UG------------CCGG--UGGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.