miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3726 3' -59.6 NC_001650.1 + 120539 0.71 0.481883
Target:  5'- cGCCGGCgaccUGCagGGCGCGGuGGGGcUUCu -3'
miRNA:   3'- -UGGUCGa---GCGa-CCGCGCC-CCUCaAAG- -5'
3726 3' -59.6 NC_001650.1 + 67194 0.66 0.799677
Target:  5'- uCCAGCUCGCU-GUGCaGGGcGUa-- -3'
miRNA:   3'- uGGUCGAGCGAcCGCGcCCCuCAaag -5'
3726 3' -59.6 NC_001650.1 + 54910 0.66 0.79088
Target:  5'- cCCGGCUCGCggccucgcucgGGCGgcCGGGGGaUUUUu -3'
miRNA:   3'- uGGUCGAGCGa----------CCGC--GCCCCUcAAAG- -5'
3726 3' -59.6 NC_001650.1 + 62024 0.66 0.763707
Target:  5'- cGCCAGCuuUCGCUu-UGUGGGGAGUc-- -3'
miRNA:   3'- -UGGUCG--AGCGAccGCGCCCCUCAaag -5'
3726 3' -59.6 NC_001650.1 + 121065 0.66 0.763707
Target:  5'- uGCCcgGGgaCGCcgcGGCGCGGGGGGc--- -3'
miRNA:   3'- -UGG--UCgaGCGa--CCGCGCCCCUCaaag -5'
3726 3' -59.6 NC_001650.1 + 53365 0.66 0.758146
Target:  5'- cGCCgGGC-CGUgacucagugggauaGGCGCGcGGGGGUUUCc -3'
miRNA:   3'- -UGG-UCGaGCGa-------------CCGCGC-CCCUCAAAG- -5'
3726 3' -59.6 NC_001650.1 + 181877 0.66 0.754417
Target:  5'- cGCCAcGggCGC-GGCGCGGGGuGUc-- -3'
miRNA:   3'- -UGGU-CgaGCGaCCGCGCCCCuCAaag -5'
3726 3' -59.6 NC_001650.1 + 15170 0.66 0.754417
Target:  5'- cGCCAcGggCGC-GGCGCGGGGuGUc-- -3'
miRNA:   3'- -UGGU-CgaGCGaCCGCGCCCCuCAaag -5'
3726 3' -59.6 NC_001650.1 + 118429 0.66 0.754417
Target:  5'- cCCGGaCUUGCUGcacaGCaGCGGGGAGa--- -3'
miRNA:   3'- uGGUC-GAGCGAC----CG-CGCCCCUCaaag -5'
3726 3' -59.6 NC_001650.1 + 113917 0.66 0.754417
Target:  5'- cCCAGCUggaaguaggCGUUGGCGUacGGGGGGc--- -3'
miRNA:   3'- uGGUCGA---------GCGACCGCG--CCCCUCaaag -5'
3726 3' -59.6 NC_001650.1 + 29035 0.7 0.51945
Target:  5'- uACCcGCaCGCccucggGGCGCGGGGGGUg-- -3'
miRNA:   3'- -UGGuCGaGCGa-----CCGCGCCCCUCAaag -5'
3726 3' -59.6 NC_001650.1 + 21665 0.7 0.529025
Target:  5'- gACCAGCggggaCGaC-GGCGCGGGGGGg--- -3'
miRNA:   3'- -UGGUCGa----GC-GaCCGCGCCCCUCaaag -5'
3726 3' -59.6 NC_001650.1 + 57739 0.69 0.587643
Target:  5'- cCCGGcCUCGCggggugGGCGacgGGGGAGUa-- -3'
miRNA:   3'- uGGUC-GAGCGa-----CCGCg--CCCCUCAaag -5'
3726 3' -59.6 NC_001650.1 + 61575 0.68 0.634384
Target:  5'- aGCCAGCUUGuCUGGgcuagaauggaugaUGUugguuggaaacuGGGGAGUUUCu -3'
miRNA:   3'- -UGGUCGAGC-GACC--------------GCG------------CCCCUCAAAG- -5'
3726 3' -59.6 NC_001650.1 + 71274 0.68 0.686998
Target:  5'- uACCAGCcCGUggaGGCGUGGGuGGUUa- -3'
miRNA:   3'- -UGGUCGaGCGa--CCGCGCCCcUCAAag -5'
3726 3' -59.6 NC_001650.1 + 39657 0.67 0.716318
Target:  5'- -gUAGCUCuGCUGaGgGCGGGGuGUUg- -3'
miRNA:   3'- ugGUCGAG-CGAC-CgCGCCCCuCAAag -5'
3726 3' -59.6 NC_001650.1 + 38518 0.66 0.79088
Target:  5'- uGCCAGUUCuacgUGGCggGCGGGGAGc--- -3'
miRNA:   3'- -UGGUCGAGcg--ACCG--CGCCCCUCaaag -5'
3726 3' -59.6 NC_001650.1 + 115942 0.72 0.436871
Target:  5'- aACCAGCa-GCUGGUGCgccgGGGGAGgagCg -3'
miRNA:   3'- -UGGUCGagCGACCGCG----CCCCUCaaaG- -5'
3726 3' -59.6 NC_001650.1 + 66789 0.69 0.577762
Target:  5'- -aCAGCaaGCUGuccCGgGGGGAGUUUCa -3'
miRNA:   3'- ugGUCGagCGACc--GCgCCCCUCAAAG- -5'
3726 3' -59.6 NC_001650.1 + 63312 0.68 0.667221
Target:  5'- cGCgCAGCUCGCggcGGUGCuuGGGGGcGUUgUCg -3'
miRNA:   3'- -UG-GUCGAGCGa--CCGCG--CCCCU-CAA-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.