miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3726 5' -58.3 NC_001650.1 + 108900 0.66 0.85019
Target:  5'- gCGcGCCUCgUCCgcGGCCGcAGGGGGg -3'
miRNA:   3'- gGUuUGGGGgAGG--CCGGUuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 183569 0.66 0.85019
Target:  5'- ---cACCCgUCUCCGGgCAGaccucGGGGGAGa -3'
miRNA:   3'- gguuUGGG-GGAGGCCgGUU-----UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 128139 0.66 0.85019
Target:  5'- gCAGuuauCCCUCUgcggUCGGCCGAgagugucuuuGGGGGAAg -3'
miRNA:   3'- gGUUu---GGGGGA----GGCCGGUU----------UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 167258 0.66 0.85019
Target:  5'- -gAAGCCCCCUgUGcGCauGAGGGGGu -3'
miRNA:   3'- ggUUUGGGGGAgGC-CGguUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 16862 0.66 0.85019
Target:  5'- ---cACCCgUCUCCGGgCAGaccucGGGGGAGa -3'
miRNA:   3'- gguuUGGG-GGAGGCCgGUU-----UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 118643 0.66 0.85019
Target:  5'- cCCGAGCCgCCCUCCaccucggauacGGUCuugcgcagGGAGGGGu- -3'
miRNA:   3'- -GGUUUGG-GGGAGG-----------CCGG--------UUUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 156344 0.66 0.849416
Target:  5'- aCCAcguagGGgUCCCUCCugaccgaGGCCAccacGGGGGGGAa -3'
miRNA:   3'- -GGU-----UUgGGGGAGG-------CCGGU----UUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 155412 0.66 0.842364
Target:  5'- aCAGACUCCC-UgGGCaCGuuGGGGAAc -3'
miRNA:   3'- gGUUUGGGGGaGgCCG-GUuuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 165423 0.66 0.839981
Target:  5'- gCCAGGgCCCCUcuuuuuuuuguaacCCuGCCcggGGAGGGGAGg -3'
miRNA:   3'- -GGUUUgGGGGA--------------GGcCGG---UUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 15179 0.66 0.834356
Target:  5'- gCGGguAUCCCCaUgUGGCCAAcGGGGAGu -3'
miRNA:   3'- gGUU--UGGGGG-AgGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 181886 0.66 0.834356
Target:  5'- gCGGguAUCCCCaUgUGGCCAAcGGGGAGu -3'
miRNA:   3'- gGUU--UGGGGG-AgGCCGGUUuCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 131355 0.66 0.834356
Target:  5'- gCCGggGGCCCUguacgggaCUCUGGCCAAGaggcuGGGGGu -3'
miRNA:   3'- -GGU--UUGGGG--------GAGGCCGGUUU-----CCCCUu -5'
3726 5' -58.3 NC_001650.1 + 37246 0.66 0.834356
Target:  5'- uCCAGAgCCCCg--GGCCAaucAAGGGcGAGa -3'
miRNA:   3'- -GGUUUgGGGGaggCCGGU---UUCCC-CUU- -5'
3726 5' -58.3 NC_001650.1 + 110040 0.66 0.833545
Target:  5'- cCCGAGCCcauuuuucuauacCCCUgCaGUUAAGGGGGAGg -3'
miRNA:   3'- -GGUUUGG-------------GGGAgGcCGGUUUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 184194 0.66 0.829466
Target:  5'- gCCAcGCCCCCUCCauuuucucaGGCcCAaaugucgacgggcgcGAGGGG-- -3'
miRNA:   3'- -GGUuUGGGGGAGG---------CCG-GU---------------UUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 2885 0.66 0.826172
Target:  5'- cCCAuaugcccACCCCCUagcccacccuaUUGGCCcAGGGGGGc -3'
miRNA:   3'- -GGUu------UGGGGGA-----------GGCCGGuUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 6431 0.66 0.826172
Target:  5'- cCUAAuUCCCCaUUGGgCAGAGGGGAu -3'
miRNA:   3'- -GGUUuGGGGGaGGCCgGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 169592 0.66 0.826172
Target:  5'- cCCAuaugcccACCCCCUagcccacccuaUUGGCCcAGGGGGGc -3'
miRNA:   3'- -GGUu------UGGGGGA-----------GGCCGGuUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 173138 0.66 0.826172
Target:  5'- cCUAAuUCCCCaUUGGgCAGAGGGGAu -3'
miRNA:   3'- -GGUUuGGGGGaGGCCgGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 161250 0.66 0.825344
Target:  5'- -aAGACCCCCUCCaaaaucuGGCgGuuccuGGGGGu -3'
miRNA:   3'- ggUUUGGGGGAGG-------CCGgUuu---CCCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.