miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
373 5' -60.9 AC_000011.1 + 16939 0.66 0.334715
Target:  5'- gGCAUCagcagGCUGGCCGCGCcGUacuUG-CGCCg -3'
miRNA:   3'- -CGUGG-----CGGUCGGCGCG-CA---ACaGCGGa -5'
373 5' -60.9 AC_000011.1 + 18532 0.66 0.326727
Target:  5'- cGCAgCGUCAGCCGCuggcuGCGgucgGUgGUCa -3'
miRNA:   3'- -CGUgGCGGUCGGCG-----CGCaa--CAgCGGa -5'
373 5' -60.9 AC_000011.1 + 23311 0.67 0.288923
Target:  5'- aGCcauCCGCCaAGUCGCgGCGgcgagagcccGUCGCCUc -3'
miRNA:   3'- -CGu--GGCGG-UCGGCG-CGCaa--------CAGCGGA- -5'
373 5' -60.9 AC_000011.1 + 15836 0.67 0.274793
Target:  5'- gGUGCCGCCGGgCGaUGCGccGcCGCCg -3'
miRNA:   3'- -CGUGGCGGUCgGC-GCGCaaCaGCGGa -5'
373 5' -60.9 AC_000011.1 + 17019 0.67 0.265908
Target:  5'- cGCACCGCCGcugcaaccaccccuGCCGCccugguGCGgagagUGUacCGCCg -3'
miRNA:   3'- -CGUGGCGGU--------------CGGCG------CGCa----ACA--GCGGa -5'
373 5' -60.9 AC_000011.1 + 9964 0.68 0.248199
Target:  5'- aGCAa-GCCAuccucGCCgaGCGCGUcGUCGCCg -3'
miRNA:   3'- -CGUggCGGU-----CGG--CGCGCAaCAGCGGa -5'
373 5' -60.9 AC_000011.1 + 3688 0.68 0.235719
Target:  5'- -uGCCGCCAGCgccgUGCGCGgaaUGgccaugggCGCCg -3'
miRNA:   3'- cgUGGCGGUCG----GCGCGCa--ACa-------GCGGa -5'
373 5' -60.9 AC_000011.1 + 15606 0.68 0.235719
Target:  5'- gGCGCC-CUcaagGGCCGCGUGcgGUCGCg- -3'
miRNA:   3'- -CGUGGcGG----UCGGCGCGCaaCAGCGga -5'
373 5' -60.9 AC_000011.1 + 12355 0.68 0.229679
Target:  5'- cGCGCU-CCAGCaGCGCGUUGUacaccagGCCg -3'
miRNA:   3'- -CGUGGcGGUCGgCGCGCAACAg------CGGa -5'
373 5' -60.9 AC_000011.1 + 13343 0.69 0.212339
Target:  5'- gGCGCUGuCCGGCCGCGagggUGcUGCCg -3'
miRNA:   3'- -CGUGGC-GGUCGGCGCgca-ACaGCGGa -5'
373 5' -60.9 AC_000011.1 + 13988 0.69 0.212339
Target:  5'- uGCAUCGCC-GCCGC-CGccaUCGCCUg -3'
miRNA:   3'- -CGUGGCGGuCGGCGcGCaacAGCGGA- -5'
373 5' -60.9 AC_000011.1 + 18622 0.69 0.206815
Target:  5'- -gGCCauguCCAGCaCGCG-GUUGUCGCCc -3'
miRNA:   3'- cgUGGc---GGUCG-GCGCgCAACAGCGGa -5'
373 5' -60.9 AC_000011.1 + 16982 0.69 0.205182
Target:  5'- cCGCCGCCGcaagaccaccacucGCCGC-CGccGUCGCCg -3'
miRNA:   3'- cGUGGCGGU--------------CGGCGcGCaaCAGCGGa -5'
373 5' -60.9 AC_000011.1 + 15946 0.71 0.141726
Target:  5'- gGCGCuggCGCCugaAGCCGCGCGUcugGcCGCCc -3'
miRNA:   3'- -CGUG---GCGG---UCGGCGCGCAa--CaGCGGa -5'
373 5' -60.9 AC_000011.1 + 8520 0.71 0.134123
Target:  5'- -uGCCGCCcGgCGCGCGUccUCGCCg -3'
miRNA:   3'- cgUGGCGGuCgGCGCGCAacAGCGGa -5'
373 5' -60.9 AC_000011.1 + 15980 0.76 0.066209
Target:  5'- cCGCCGCCguGGCCGCGCGUcuccggGUCcuGCCg -3'
miRNA:   3'- cGUGGCGG--UCGGCGCGCAa-----CAG--CGGa -5'
373 5' -60.9 AC_000011.1 + 24207 1.08 0.00018
Target:  5'- aGCACCGCCAGCCGCGCGUUGUCGCCUu -3'
miRNA:   3'- -CGUGGCGGUCGGCGCGCAACAGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.