miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 3' -58.5 NC_001650.1 + 65470 0.68 0.751872
Target:  5'- -aGGGGg---GCGGcGAGGGGGCggugUACg -3'
miRNA:   3'- agCCCCaagaCGUC-CUUCCCCGa---GUG- -5'
3731 3' -58.5 NC_001650.1 + 29365 0.68 0.742407
Target:  5'- cUGGGGUUUcGCAGGAAGGccugugggccgaGGCUa-- -3'
miRNA:   3'- aGCCCCAAGaCGUCCUUCC------------CCGAgug -5'
3731 3' -58.5 NC_001650.1 + 159518 0.68 0.742407
Target:  5'- cCGGGGUUcCUGCuguGGAccAGGGcGCUgGu -3'
miRNA:   3'- aGCCCCAA-GACGu--CCU--UCCC-CGAgUg -5'
3731 3' -58.5 NC_001650.1 + 17052 0.68 0.732849
Target:  5'- gUUGGGcaaugggGCGGGGAGGGGCUUg- -3'
miRNA:   3'- -AGCCCcaaga--CGUCCUUCCCCGAGug -5'
3731 3' -58.5 NC_001650.1 + 86779 0.68 0.732849
Target:  5'- aUCGGGGagC-GCAGGuuGGcGGC-CACg -3'
miRNA:   3'- -AGCCCCaaGaCGUCCuuCC-CCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 183759 0.68 0.732849
Target:  5'- gUUGGGcaaugggGCGGGGAGGGGCUUg- -3'
miRNA:   3'- -AGCCCcaaga--CGUCCUUCCCCGAGug -5'
3731 3' -58.5 NC_001650.1 + 92917 0.68 0.723208
Target:  5'- gCGGGcgauaGUgg-GCAGGAuccGGGGGCUgGCg -3'
miRNA:   3'- aGCCC-----CAagaCGUCCU---UCCCCGAgUG- -5'
3731 3' -58.5 NC_001650.1 + 145500 0.68 0.713491
Target:  5'- cCGGGGgcuccuggUCaGCuGGAgcuucAGGGGCUcCACg -3'
miRNA:   3'- aGCCCCa-------AGaCGuCCU-----UCCCCGA-GUG- -5'
3731 3' -58.5 NC_001650.1 + 137808 0.68 0.713491
Target:  5'- gCGGGGUgagaUGgAgcGGAGGGGGC-CGCc -3'
miRNA:   3'- aGCCCCAag--ACgU--CCUUCCCCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 27052 0.68 0.713491
Target:  5'- gCGGGGcaugacgcUggUGCAGGAGGGGGCc--- -3'
miRNA:   3'- aGCCCC--------AagACGUCCUUCCCCGagug -5'
3731 3' -58.5 NC_001650.1 + 107855 0.69 0.693868
Target:  5'- -aGGGGg---GCGGGGgcgaGGGGGCgCACg -3'
miRNA:   3'- agCCCCaagaCGUCCU----UCCCCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 76700 0.69 0.683978
Target:  5'- gUCGGcGUggUGCAGGAacuugaccggcaGGGGGCUgCGCu -3'
miRNA:   3'- -AGCCcCAagACGUCCU------------UCCCCGA-GUG- -5'
3731 3' -58.5 NC_001650.1 + 154050 0.69 0.683978
Target:  5'- gCGGGuGUUCUGgAGGAGGugcuGGaGCUCGa -3'
miRNA:   3'- aGCCC-CAAGACgUCCUUC----CC-CGAGUg -5'
3731 3' -58.5 NC_001650.1 + 162278 0.69 0.683978
Target:  5'- cCGGGGgucCUGCagaAGGAggccGGGGaGCUCAg -3'
miRNA:   3'- aGCCCCaa-GACG---UCCU----UCCC-CGAGUg -5'
3731 3' -58.5 NC_001650.1 + 28588 0.69 0.674047
Target:  5'- gCGGGGcUCguggugaGCGGGGucacGGGGGCgCGCg -3'
miRNA:   3'- aGCCCCaAGa------CGUCCU----UCCCCGaGUG- -5'
3731 3' -58.5 NC_001650.1 + 122146 0.69 0.664083
Target:  5'- gCGGGGgcg-GCGGGAGGGGGag-ACg -3'
miRNA:   3'- aGCCCCaagaCGUCCUUCCCCgagUG- -5'
3731 3' -58.5 NC_001650.1 + 37347 0.7 0.624059
Target:  5'- aCGGGGUUCUGCGacGAGcuGGccGCUCACa -3'
miRNA:   3'- aGCCCCAAGACGUccUUC--CC--CGAGUG- -5'
3731 3' -58.5 NC_001650.1 + 51594 0.7 0.614049
Target:  5'- aUGGGGgaggccgcCUGCAGGuuGGGGGCcagCGCc -3'
miRNA:   3'- aGCCCCaa------GACGUCCu-UCCCCGa--GUG- -5'
3731 3' -58.5 NC_001650.1 + 100721 0.7 0.614049
Target:  5'- aUCGGGcgcCUGCAGGGagaccgcaaAGGGGgaCACg -3'
miRNA:   3'- -AGCCCcaaGACGUCCU---------UCCCCgaGUG- -5'
3731 3' -58.5 NC_001650.1 + 28806 0.7 0.584125
Target:  5'- -gGGGGgaggagagGUGGGGAGGGGcCUCACc -3'
miRNA:   3'- agCCCCaaga----CGUCCUUCCCC-GAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.