miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 5' -51.1 NC_001650.1 + 73529 0.67 0.989212
Target:  5'- aGGUGAUCCUgacCCCCGUgacggcgGAcguGUCCu -3'
miRNA:   3'- aCUACUAGGGga-GGGGCAa------UUu--CAGG- -5'
3731 5' -51.1 NC_001650.1 + 104469 0.67 0.989212
Target:  5'- aGAUGggCCCgCUUCCCacagGUUuagGAAGUCUg -3'
miRNA:   3'- aCUACuaGGG-GAGGGG----CAA---UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 71882 0.67 0.989212
Target:  5'- gUGAUGAacgCCCagcucaucgCCCUGgugaUAGAGUCCu -3'
miRNA:   3'- -ACUACUa--GGGga-------GGGGCa---AUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 73799 0.67 0.989073
Target:  5'- gGAUGAuuccuccuccucuUCCuCCUCCUcagauuCGgaGAAGUCCa -3'
miRNA:   3'- aCUACU-------------AGG-GGAGGG------GCaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 65773 0.68 0.987762
Target:  5'- cGGUGuucagggaCCUCUCCCCGcUGcugugcagcAAGUCCg -3'
miRNA:   3'- aCUACua------GGGGAGGGGCaAU---------UUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 56150 0.68 0.987762
Target:  5'- ---gGAUCCCCgcguagCCCCuc--GGGUCCg -3'
miRNA:   3'- acuaCUAGGGGa-----GGGGcaauUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 40366 0.68 0.986165
Target:  5'- gGGUG-UCCaUCUCCCUcagGAAGUCCu -3'
miRNA:   3'- aCUACuAGG-GGAGGGGcaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 111503 0.68 0.986165
Target:  5'- cUGGUGAUCCCCgCCgCCGcgcgcacgggGGAGgCCa -3'
miRNA:   3'- -ACUACUAGGGGaGG-GGCaa--------UUUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 71071 0.68 0.982499
Target:  5'- gGAUGGccaUCCCCUCCUCGgucaucAGGGUg- -3'
miRNA:   3'- aCUACU---AGGGGAGGGGCaa----UUUCAgg -5'
3731 5' -51.1 NC_001650.1 + 55818 0.68 0.980413
Target:  5'- aGGUGGUgUCCaugugCCCCGcggccagGGAGUCCg -3'
miRNA:   3'- aCUACUAgGGGa----GGGGCaa-----UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 162222 0.69 0.978146
Target:  5'- cGAacuUGAggucaggCCUCUCCCCGg---GGUCCc -3'
miRNA:   3'- aCU---ACUa------GGGGAGGGGCaauuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 70537 0.69 0.976696
Target:  5'- cGGUGAUCCCCUCCuucauaggcauggagCUGUgcguGGUggCCg -3'
miRNA:   3'- aCUACUAGGGGAGG---------------GGCAauu-UCA--GG- -5'
3731 5' -51.1 NC_001650.1 + 135832 0.69 0.975691
Target:  5'- aGAUGGcCCUCUUCCUGUUuAGGUUg -3'
miRNA:   3'- aCUACUaGGGGAGGGGCAAuUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 155408 0.69 0.975691
Target:  5'- cGGUGAggCCCCUCCCCaccuc--UCCu -3'
miRNA:   3'- aCUACUa-GGGGAGGGGcaauuucAGG- -5'
3731 5' -51.1 NC_001650.1 + 66568 0.69 0.975691
Target:  5'- aGGUGGUCCCCguagaggaCCUC---AAAGUCCu -3'
miRNA:   3'- aCUACUAGGGGa-------GGGGcaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 80650 0.69 0.975691
Target:  5'- gGGUGcGUCCCCUgCCaCGggagGAAGaUCCa -3'
miRNA:   3'- aCUAC-UAGGGGAgGG-GCaa--UUUC-AGG- -5'
3731 5' -51.1 NC_001650.1 + 99919 0.69 0.975691
Target:  5'- gGGUcccCCCCUCCCCGgcccGGGUCa -3'
miRNA:   3'- aCUAcuaGGGGAGGGGCaau-UUCAGg -5'
3731 5' -51.1 NC_001650.1 + 159809 0.69 0.97304
Target:  5'- ---aGggCCCCUCCCCGUaAgcGUgCCu -3'
miRNA:   3'- acuaCuaGGGGAGGGGCAaUuuCA-GG- -5'
3731 5' -51.1 NC_001650.1 + 119570 0.69 0.970186
Target:  5'- aUGGUGGUCaaaaaCCUgaacgUCCCGUU--GGUCCa -3'
miRNA:   3'- -ACUACUAGg----GGA-----GGGGCAAuuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 173830 0.69 0.967123
Target:  5'- cUGGUGGUCCauCCUCCCgGg---GGUCUc -3'
miRNA:   3'- -ACUACUAGG--GGAGGGgCaauuUCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.