Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
374 | 3' | -61.5 | AC_000011.1 | + | 24486 | 1.09 | 0.000131 |
Target: 5'- aAGCGGCGCAGGCACUCCAGCUCCACGg -3' miRNA: 3'- -UCGCCGCGUCCGUGAGGUCGAGGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 17358 | 0.8 | 0.025524 |
Target: 5'- uGGCGGUGCAGGC-CUCuCAGCgCCACu -3' miRNA: 3'- -UCGCCGCGUCCGuGAG-GUCGaGGUGc -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 15576 | 0.76 | 0.047256 |
Target: 5'- cGCGuGCGCGGGCACuUCCGcGCUcCCugGg -3' miRNA: 3'- uCGC-CGCGUCCGUG-AGGU-CGA-GGugC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 11608 | 0.73 | 0.081837 |
Target: 5'- cAGCGGCaGCccGCGCUCCuGCaCCACGa -3' miRNA: 3'- -UCGCCG-CGucCGUGAGGuCGaGGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 34264 | 0.72 | 0.105696 |
Target: 5'- gGGCGGUGCuGGCcCUgUGGUUCCGCa -3' miRNA: 3'- -UCGCCGCGuCCGuGAgGUCGAGGUGc -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 15852 | 0.7 | 0.143716 |
Target: 5'- -aUGGCGgGGGUGCUCCGGUgCCGCc -3' miRNA: 3'- ucGCCGCgUCCGUGAGGUCGaGGUGc -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 21282 | 0.7 | 0.156078 |
Target: 5'- -aUGGCGCAGGCcaGCUUguGCggggCCAUGa -3' miRNA: 3'- ucGCCGCGUCCG--UGAGguCGa---GGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 2027 | 0.69 | 0.18372 |
Target: 5'- --aGGCGCuGGCACuUCCAuguuCUCCACa -3' miRNA: 3'- ucgCCGCGuCCGUG-AGGUc---GAGGUGc -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 25041 | 0.69 | 0.174055 |
Target: 5'- cAGCGGCgGgGGGCACUCgcggaagguCAGCggCACGa -3' miRNA: 3'- -UCGCCG-CgUCCGUGAG---------GUCGagGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 26514 | 0.69 | 0.164847 |
Target: 5'- cGGCGGC-CAGGCccaUCUggggcugguAGCUCCACa -3' miRNA: 3'- -UCGCCGcGUCCGug-AGG---------UCGAGGUGc -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 12365 | 0.69 | 0.18372 |
Target: 5'- uAGCGG-GCcacGCGCUCCAGCagCGCGu -3' miRNA: 3'- -UCGCCgCGuc-CGUGAGGUCGagGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 25074 | 0.69 | 0.169395 |
Target: 5'- cAGCGGCGaGGGCcuGCUCgAGUgCCACu -3' miRNA: 3'- -UCGCCGCgUCCG--UGAGgUCGaGGUGc -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 8510 | 0.69 | 0.160408 |
Target: 5'- gGGCGGCagGGGCACgUCGGCgCCGCGc -3' miRNA: 3'- -UCGCCGcgUCCGUGaGGUCGaGGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 19858 | 0.69 | 0.160408 |
Target: 5'- uGCGGgGCuGcGCuaccGCUCCAuGCUCCugGg -3' miRNA: 3'- uCGCCgCGuC-CG----UGAGGU-CGAGGugC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 16350 | 0.69 | 0.18372 |
Target: 5'- cGGCGaGCGCuccGGCACcgcuUCCAagcGCUCCuACGa -3' miRNA: 3'- -UCGC-CGCGu--CCGUG----AGGU---CGAGG-UGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 11138 | 0.69 | 0.178829 |
Target: 5'- cGCGGgGCGGGaGCUgCGGCgcggCCugGa -3' miRNA: 3'- uCGCCgCGUCCgUGAgGUCGa---GGugC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 8788 | 0.69 | 0.164847 |
Target: 5'- cGCGGC-CGGcGCGCUCCacGGUggCCGCGa -3' miRNA: 3'- uCGCCGcGUC-CGUGAGG--UCGa-GGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 18216 | 0.68 | 0.188727 |
Target: 5'- cGGCGGCGCuucacacucuGCACUcCCAGaC-CCACGa -3' miRNA: 3'- -UCGCCGCGuc--------CGUGA-GGUC-GaGGUGC- -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 5459 | 0.67 | 0.245683 |
Target: 5'- cGGgGGCGUAGGCG-UCC-GCgCCGCa -3' miRNA: 3'- -UCgCCGCGUCCGUgAGGuCGaGGUGc -5' |
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374 | 3' | -61.5 | AC_000011.1 | + | 22923 | 0.67 | 0.250162 |
Target: 5'- cGCGGC-CAGGggguCGCUCUcguccagggucuaaAGCUCCGCu -3' miRNA: 3'- uCGCCGcGUCC----GUGAGG--------------UCGAGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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