miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3746 3' -55.4 NC_001650.1 + 75868 0.66 0.955811
Target:  5'- uGUUGUGGggGUuCGUGCGCA-GGCu- -3'
miRNA:   3'- -CGACGUCuaCAuGCGCGCGUaCCGcc -5'
3746 3' -55.4 NC_001650.1 + 94781 0.66 0.955811
Target:  5'- --aGCAGGagguUGUAgGCG-GaCGUGGCGGc -3'
miRNA:   3'- cgaCGUCU----ACAUgCGCgC-GUACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 117910 0.66 0.951907
Target:  5'- gGC-GCAGAgGUugGCGUaGCugAUGGCGu -3'
miRNA:   3'- -CGaCGUCUaCAugCGCG-CG--UACCGCc -5'
3746 3' -55.4 NC_001650.1 + 103824 0.66 0.951907
Target:  5'- aGCUGCAcGUucugGgGCGCGgAgaUGGCGGg -3'
miRNA:   3'- -CGACGUcUAca--UgCGCGCgU--ACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 30808 0.66 0.950692
Target:  5'- cGCUGCGcGUGcugACcgagagcucccugaGCGUGC-UGGCGGg -3'
miRNA:   3'- -CGACGUcUACa--UG--------------CGCGCGuACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 124818 0.66 0.949457
Target:  5'- aGUUGguGAggcccuccagcaGCGCGCGguUGGCGu -3'
miRNA:   3'- -CGACguCUaca---------UGCGCGCguACCGCc -5'
3746 3' -55.4 NC_001650.1 + 52955 0.66 0.948201
Target:  5'- gGCUGCAGGUGgauggggggccuccUGCGCGUugGGCa- -3'
miRNA:   3'- -CGACGUCUACau------------GCGCGCGuaCCGcc -5'
3746 3' -55.4 NC_001650.1 + 50018 0.66 0.943421
Target:  5'- --cGCGGggG-AgGCGUGUGUGGUGGu -3'
miRNA:   3'- cgaCGUCuaCaUgCGCGCGUACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 75161 0.66 0.938834
Target:  5'- aGCgGCAGAUGgaguagACGCGCuccaggcucagGCcgGGCu- -3'
miRNA:   3'- -CGaCGUCUACa-----UGCGCG-----------CGuaCCGcc -5'
3746 3' -55.4 NC_001650.1 + 81963 0.66 0.938834
Target:  5'- uGCUGCAGcaccUGCGCcggcuGCGCcgucUGGUGGg -3'
miRNA:   3'- -CGACGUCuac-AUGCG-----CGCGu---ACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 48063 0.66 0.934015
Target:  5'- gGCcGCGGGgg-GCGCcuucagGCGCAUGGCcaGGg -3'
miRNA:   3'- -CGaCGUCUacaUGCG------CGCGUACCG--CC- -5'
3746 3' -55.4 NC_001650.1 + 115311 0.66 0.934015
Target:  5'- cGCUgGUAcGUGUACccgcCGCGCAUGGCc- -3'
miRNA:   3'- -CGA-CGUcUACAUGc---GCGCGUACCGcc -5'
3746 3' -55.4 NC_001650.1 + 126454 0.67 0.928962
Target:  5'- ---uCGGccGUccgaGCGCGCGCGUGGgGGa -3'
miRNA:   3'- cgacGUCuaCA----UGCGCGCGUACCgCC- -5'
3746 3' -55.4 NC_001650.1 + 111101 0.67 0.928962
Target:  5'- cGCgaggGCGGcgGU-CGCGaCGCggGGCaGGg -3'
miRNA:   3'- -CGa---CGUCuaCAuGCGC-GCGuaCCG-CC- -5'
3746 3' -55.4 NC_001650.1 + 99403 0.67 0.928962
Target:  5'- --gGUAGuacacGUacACGUaGCGCAUGGCGGg -3'
miRNA:   3'- cgaCGUCua---CA--UGCG-CGCGUACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 36249 0.67 0.928962
Target:  5'- aGC-GCAGGUGcguCGCGCGUAcagGGCu- -3'
miRNA:   3'- -CGaCGUCUACau-GCGCGCGUa--CCGcc -5'
3746 3' -55.4 NC_001650.1 + 115284 0.67 0.918155
Target:  5'- uGCUGUAGAgGUACGUGUuccCGUGG-GGc -3'
miRNA:   3'- -CGACGUCUaCAUGCGCGc--GUACCgCC- -5'
3746 3' -55.4 NC_001650.1 + 3496 0.67 0.912402
Target:  5'- uGC-GCGGGUcagGUGgGCGgGCG-GGCGGg -3'
miRNA:   3'- -CGaCGUCUA---CAUgCGCgCGUaCCGCC- -5'
3746 3' -55.4 NC_001650.1 + 37624 0.67 0.912402
Target:  5'- uGgaGgAGGUGUGCGCGCGgG-GGCc- -3'
miRNA:   3'- -CgaCgUCUACAUGCGCGCgUaCCGcc -5'
3746 3' -55.4 NC_001650.1 + 170203 0.67 0.912402
Target:  5'- uGC-GCGGGUcagGUGgGCGgGCG-GGCGGg -3'
miRNA:   3'- -CGaCGUCUA---CAUgCGCgCGUaCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.