miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3746 3' -55.4 NC_001650.1 + 65503 1.12 0.002643
Target:  5'- cGCUGCAGAUGUACGCGCGCAUGGCGGc -3'
miRNA:   3'- -CGACGUCUACAUGCGCGCGUACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 115111 0.79 0.319754
Target:  5'- gGC-GCGGAUGU-CGUGCGCG-GGCGGg -3'
miRNA:   3'- -CGaCGUCUACAuGCGCGCGUaCCGCC- -5'
3746 3' -55.4 NC_001650.1 + 50993 0.78 0.389562
Target:  5'- aGCUGCGGggGgacggggGCGCGgGCGcGGCGGc -3'
miRNA:   3'- -CGACGUCuaCa------UGCGCgCGUaCCGCC- -5'
3746 3' -55.4 NC_001650.1 + 26924 0.73 0.642657
Target:  5'- aGCUGguGGUGguagAgucccaguccagagCGUGCGCGUGGgGGa -3'
miRNA:   3'- -CGACguCUACa---U--------------GCGCGCGUACCgCC- -5'
3746 3' -55.4 NC_001650.1 + 110333 0.7 0.800417
Target:  5'- aCUGCAGGUccGUGC-CGCugGUGGCGGg -3'
miRNA:   3'- cGACGUCUA--CAUGcGCGcgUACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 125463 0.7 0.808321
Target:  5'- gGCUGCAccuc-ACGCGCuacggccuguucuGCGUGGCGGu -3'
miRNA:   3'- -CGACGUcuacaUGCGCG-------------CGUACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 63293 0.7 0.809192
Target:  5'- --aGCAGGcucuUGgccaGCGCGCGCAgcucgcGGCGGu -3'
miRNA:   3'- cgaCGUCU----ACa---UGCGCGCGUa-----CCGCC- -5'
3746 3' -55.4 NC_001650.1 + 61815 0.7 0.809192
Target:  5'- gGCggacagGUAGuUGUA-GCGCGCGUGGCa- -3'
miRNA:   3'- -CGa-----CGUCuACAUgCGCGCGUACCGcc -5'
3746 3' -55.4 NC_001650.1 + 28376 0.7 0.81781
Target:  5'- aGCUggacGCGGGgucccUGgaggACGCGUGCGcgGGCGGg -3'
miRNA:   3'- -CGA----CGUCU-----ACa---UGCGCGCGUa-CCGCC- -5'
3746 3' -55.4 NC_001650.1 + 29977 0.69 0.833722
Target:  5'- aGCUcGCGGccGUGUACGCGCagGUGuuugaccUGGCGGc -3'
miRNA:   3'- -CGA-CGUC--UACAUGCGCG--CGU-------ACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 62807 0.69 0.834542
Target:  5'- cGCgUGCAGGUGcuugAgGCGCGa--GGCGGc -3'
miRNA:   3'- -CG-ACGUCUACa---UgCGCGCguaCCGCC- -5'
3746 3' -55.4 NC_001650.1 + 69304 0.69 0.850554
Target:  5'- cGCgUGCAGGU---CGCGCGCA-GGCcGGu -3'
miRNA:   3'- -CG-ACGUCUAcauGCGCGCGUaCCG-CC- -5'
3746 3' -55.4 NC_001650.1 + 102440 0.68 0.863558
Target:  5'- aGCUGCAGccGUGCGuCGUgcccguccagcaGCAggccgcccaggaggUGGCGGu -3'
miRNA:   3'- -CGACGUCuaCAUGC-GCG------------CGU--------------ACCGCC- -5'
3746 3' -55.4 NC_001650.1 + 111501 0.68 0.865792
Target:  5'- gGCUGguGAUccccgccgcCGCGCGCAcGGgGGa -3'
miRNA:   3'- -CGACguCUAcau------GCGCGCGUaCCgCC- -5'
3746 3' -55.4 NC_001650.1 + 67902 0.68 0.880208
Target:  5'- -aUGCAaaaGUACGCGCGCgagauuGUGGgGGa -3'
miRNA:   3'- cgACGUcuaCAUGCGCGCG------UACCgCC- -5'
3746 3' -55.4 NC_001650.1 + 107367 0.68 0.887094
Target:  5'- cGCUGCAGAUcgccaGCuGCGC--GGCGGc -3'
miRNA:   3'- -CGACGUCUAcaug-CG-CGCGuaCCGCC- -5'
3746 3' -55.4 NC_001650.1 + 41610 0.68 0.89376
Target:  5'- uGCUGCuuGAcGgcggGCGCGUGCAUGGa-- -3'
miRNA:   3'- -CGACGu-CUaCa---UGCGCGCGUACCgcc -5'
3746 3' -55.4 NC_001650.1 + 35252 0.68 0.89376
Target:  5'- gGgaGCAGGagccUGUGgaGCGCGgGUgGGCGGg -3'
miRNA:   3'- -CgaCGUCU----ACAUg-CGCGCgUA-CCGCC- -5'
3746 3' -55.4 NC_001650.1 + 82611 0.67 0.905806
Target:  5'- -gUGCAGGugcgugaggucggUGUACGgGUGCGaguuugggGGCGGg -3'
miRNA:   3'- cgACGUCU-------------ACAUGCgCGCGUa-------CCGCC- -5'
3746 3' -55.4 NC_001650.1 + 30668 0.67 0.906417
Target:  5'- cCUGgGGgcGgACGCGCGCGccGCGGg -3'
miRNA:   3'- cGACgUCuaCaUGCGCGCGUacCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.