miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3746 5' -59.1 NC_001650.1 + 107693 0.66 0.80616
Target:  5'- uGCCUGCCuguuauucaguuuaGGUGCgaCGCCUccaggGCCCa-- -3'
miRNA:   3'- -UGGACGG--------------UCACGaaGCGGA-----UGGGgag -5'
3746 5' -59.1 NC_001650.1 + 62327 0.66 0.800044
Target:  5'- cACCU-CCAGcGCguaguccgcgUCGCCgggguugaGCCCCUCg -3'
miRNA:   3'- -UGGAcGGUCaCGa---------AGCGGa-------UGGGGAG- -5'
3746 5' -59.1 NC_001650.1 + 142297 0.66 0.800044
Target:  5'- cGCCUGCCucUGCUUCuacGCCcuguacGCCCCg- -3'
miRNA:   3'- -UGGACGGucACGAAG---CGGa-----UGGGGag -5'
3746 5' -59.1 NC_001650.1 + 101808 0.66 0.800044
Target:  5'- cCCUGCCAGUuggcggGCUUgGCCagcucggccACCgCCUCc -3'
miRNA:   3'- uGGACGGUCA------CGAAgCGGa--------UGG-GGAG- -5'
3746 5' -59.1 NC_001650.1 + 168903 0.66 0.791184
Target:  5'- cUCUGCCccccGUGCa--GCC-GCCCCUCu -3'
miRNA:   3'- uGGACGGu---CACGaagCGGaUGGGGAG- -5'
3746 5' -59.1 NC_001650.1 + 126461 0.66 0.791184
Target:  5'- uACCggcGCCGG-GCUacucccccgUCGCCcACCCCg- -3'
miRNA:   3'- -UGGa--CGGUCaCGA---------AGCGGaUGGGGag -5'
3746 5' -59.1 NC_001650.1 + 2196 0.66 0.791184
Target:  5'- cUCUGCCccccGUGCa--GCC-GCCCCUCu -3'
miRNA:   3'- uGGACGGu---CACGaagCGGaUGGGGAG- -5'
3746 5' -59.1 NC_001650.1 + 121393 0.66 0.791184
Target:  5'- cGCCccgGCCGGggGCgcCGCCUcGCgCCUCa -3'
miRNA:   3'- -UGGa--CGGUCa-CGaaGCGGA-UGgGGAG- -5'
3746 5' -59.1 NC_001650.1 + 156223 0.66 0.782186
Target:  5'- cACCUGCCAGUagGUgaacuucUCGC--GCUCCUCa -3'
miRNA:   3'- -UGGACGGUCA--CGa------AGCGgaUGGGGAG- -5'
3746 5' -59.1 NC_001650.1 + 108993 0.66 0.773059
Target:  5'- cGCCUGCCcgucuucaaccuGGUGCUggacuUUGaCCUcCCCCUg -3'
miRNA:   3'- -UGGACGG------------UCACGA-----AGC-GGAuGGGGAg -5'
3746 5' -59.1 NC_001650.1 + 115560 0.66 0.773059
Target:  5'- cCCUGgCAGacaGCUUCGCCccggugagcaGCCUCUCg -3'
miRNA:   3'- uGGACgGUCa--CGAAGCGGa---------UGGGGAG- -5'
3746 5' -59.1 NC_001650.1 + 169565 0.67 0.76381
Target:  5'- aACCUGCCuG-GCaacaGCCUACCUCa- -3'
miRNA:   3'- -UGGACGGuCaCGaag-CGGAUGGGGag -5'
3746 5' -59.1 NC_001650.1 + 2858 0.67 0.76381
Target:  5'- aACCUGCCuG-GCaacaGCCUACCUCa- -3'
miRNA:   3'- -UGGACGGuCaCGaag-CGGAUGGGGag -5'
3746 5' -59.1 NC_001650.1 + 108679 0.67 0.76381
Target:  5'- gGCCUGCUGGaccugGCcgCGCUgggcgACUCCUCg -3'
miRNA:   3'- -UGGACGGUCa----CGaaGCGGa----UGGGGAG- -5'
3746 5' -59.1 NC_001650.1 + 146992 0.67 0.76381
Target:  5'- cGCCUGCCcaauaUGUc-UGCCaGCCCCUCg -3'
miRNA:   3'- -UGGACGGuc---ACGaaGCGGaUGGGGAG- -5'
3746 5' -59.1 NC_001650.1 + 168418 0.67 0.754448
Target:  5'- cCCUGCCuG-GCaacCGCCUACCUCa- -3'
miRNA:   3'- uGGACGGuCaCGaa-GCGGAUGGGGag -5'
3746 5' -59.1 NC_001650.1 + 1711 0.67 0.754448
Target:  5'- cCCUGCCuG-GCaacCGCCUACCUCa- -3'
miRNA:   3'- uGGACGGuCaCGaa-GCGGAUGGGGag -5'
3746 5' -59.1 NC_001650.1 + 158780 0.67 0.754448
Target:  5'- cACCaGCaGGUGCUcggcgUCGCucCUGCCCCUg -3'
miRNA:   3'- -UGGaCGgUCACGA-----AGCG--GAUGGGGAg -5'
3746 5' -59.1 NC_001650.1 + 27582 0.67 0.741169
Target:  5'- gGCCUGCCcuccuucccgggcGUGCc-CGCCUcgGCCCuCUCg -3'
miRNA:   3'- -UGGACGGu------------CACGaaGCGGA--UGGG-GAG- -5'
3746 5' -59.1 NC_001650.1 + 95489 0.67 0.725775
Target:  5'- uGCCgGCCGGggGCUUCcCCgaggagcCCCCUCc -3'
miRNA:   3'- -UGGaCGGUCa-CGAAGcGGau-----GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.