miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3749 3' -60.2 NC_001650.1 + 28760 0.66 0.780105
Target:  5'- gCGCCUUCGGGGUcuuugacgGUgccgccgcCGGAGg-GGGCGg -3'
miRNA:   3'- -GUGGAAGUCCCG--------CA--------GCCUCgaCCCGU- -5'
3749 3' -60.2 NC_001650.1 + 161000 0.66 0.780105
Target:  5'- gACCUcCcGGGCGUCcGAGggGGGCc -3'
miRNA:   3'- gUGGAaGuCCCGCAGcCUCgaCCCGu -5'
3749 3' -60.2 NC_001650.1 + 91047 0.66 0.780105
Target:  5'- -gUCUUgGGGGCGgUGGGGUacuccuucuUGGGCAc -3'
miRNA:   3'- guGGAAgUCCCGCaGCCUCG---------ACCCGU- -5'
3749 3' -60.2 NC_001650.1 + 122208 0.66 0.780105
Target:  5'- gGCCUggacCGcGGCGagGGAGCUGGuGCc -3'
miRNA:   3'- gUGGAa---GUcCCGCagCCUCGACC-CGu -5'
3749 3' -60.2 NC_001650.1 + 109378 0.66 0.780105
Target:  5'- gGCCggCAGGaGCcuggccagGGAGUUGGGCAg -3'
miRNA:   3'- gUGGaaGUCC-CGcag-----CCUCGACCCGU- -5'
3749 3' -60.2 NC_001650.1 + 32323 0.66 0.771083
Target:  5'- uGCCgUUCAGGGUaugCGGGGCcucgccuacGGGCGg -3'
miRNA:   3'- gUGG-AAGUCCCGca-GCCUCGa--------CCCGU- -5'
3749 3' -60.2 NC_001650.1 + 62564 0.66 0.771083
Target:  5'- gGCCgcCAGGuCGUCcucggGGGGcCUGGGCAg -3'
miRNA:   3'- gUGGaaGUCCcGCAG-----CCUC-GACCCGU- -5'
3749 3' -60.2 NC_001650.1 + 120546 0.66 0.771083
Target:  5'- gACCUgCAGGGCG-CGGug--GGGCu -3'
miRNA:   3'- gUGGAaGUCCCGCaGCCucgaCCCGu -5'
3749 3' -60.2 NC_001650.1 + 103828 0.66 0.771083
Target:  5'- gCACgUUCuGGGGCG-CGGAGauggcGGGCu -3'
miRNA:   3'- -GUGgAAG-UCCCGCaGCCUCga---CCCGu -5'
3749 3' -60.2 NC_001650.1 + 33558 0.66 0.771083
Target:  5'- gCAUCaaCAGGGUGUUGGgagAGCUguccaGGGCAu -3'
miRNA:   3'- -GUGGaaGUCCCGCAGCC---UCGA-----CCCGU- -5'
3749 3' -60.2 NC_001650.1 + 30685 0.66 0.771083
Target:  5'- gCGCCg-CGGGGCGagcgGGAGggGGGCGg -3'
miRNA:   3'- -GUGGaaGUCCCGCag--CCUCgaCCCGU- -5'
3749 3' -60.2 NC_001650.1 + 122042 0.66 0.771083
Target:  5'- uCGCCUUCgAGGacGCGgCGGGGCUGGc-- -3'
miRNA:   3'- -GUGGAAG-UCC--CGCaGCCUCGACCcgu -5'
3749 3' -60.2 NC_001650.1 + 29042 0.66 0.761946
Target:  5'- aCGCCcUCGGGGCG-CGGGGg-GuGGCc -3'
miRNA:   3'- -GUGGaAGUCCCGCaGCCUCgaC-CCGu -5'
3749 3' -60.2 NC_001650.1 + 22326 0.66 0.761946
Target:  5'- gCACCUUCggcuGGGGCaaCGu-GCUGGGCc -3'
miRNA:   3'- -GUGGAAG----UCCCGcaGCcuCGACCCGu -5'
3749 3' -60.2 NC_001650.1 + 136958 0.66 0.761026
Target:  5'- gACCcUCGGGGgGUUuggggguguuuagGGAGCgaggGGGUAg -3'
miRNA:   3'- gUGGaAGUCCCgCAG-------------CCUCGa---CCCGU- -5'
3749 3' -60.2 NC_001650.1 + 38310 0.66 0.7527
Target:  5'- gGCCaaaCGGcGGUGUgGgGGGCUGGGCu -3'
miRNA:   3'- gUGGaa-GUC-CCGCAgC-CUCGACCCGu -5'
3749 3' -60.2 NC_001650.1 + 63888 0.66 0.743356
Target:  5'- gACUUUCuugaagAGGuucucuGCGUCGGAgagccGCUGGGCGa -3'
miRNA:   3'- gUGGAAG------UCC------CGCAGCCU-----CGACCCGU- -5'
3749 3' -60.2 NC_001650.1 + 134547 0.66 0.73392
Target:  5'- cCACCUgggUgGGGGCGUagaGGGGCaaGGCc -3'
miRNA:   3'- -GUGGA---AgUCCCGCAg--CCUCGacCCGu -5'
3749 3' -60.2 NC_001650.1 + 14619 0.66 0.73392
Target:  5'- gGCCaaUAGGGUGggcuaGGGGgUGGGCAu -3'
miRNA:   3'- gUGGaaGUCCCGCag---CCUCgACCCGU- -5'
3749 3' -60.2 NC_001650.1 + 181326 0.66 0.73392
Target:  5'- gGCCaaUAGGGUGggcuaGGGGgUGGGCAu -3'
miRNA:   3'- gUGGaaGUCCCGCag---CCUCgACCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.