miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3749 5' -55.9 NC_001650.1 + 64320 0.66 0.929963
Target:  5'- cGUGGgCGACg--G-CCCCGAGugCAc -3'
miRNA:   3'- uCACCgGUUGauaCgGGGGUUCugGU- -5'
3749 5' -55.9 NC_001650.1 + 134094 0.66 0.929963
Target:  5'- ---cGCCAccucuUUAUGCCCCCAAG-CCu -3'
miRNA:   3'- ucacCGGUu----GAUACGGGGGUUCuGGu -5'
3749 5' -55.9 NC_001650.1 + 133880 0.66 0.929963
Target:  5'- cGGUcGCCu-CUAgaggccGCCCCUggGACCGc -3'
miRNA:   3'- -UCAcCGGuuGAUa-----CGGGGGuuCUGGU- -5'
3749 5' -55.9 NC_001650.1 + 122240 0.66 0.929963
Target:  5'- --aGGCCGgggGCgagGUGCCCCaCGAGcuccucACCAa -3'
miRNA:   3'- ucaCCGGU---UGa--UACGGGG-GUUC------UGGU- -5'
3749 5' -55.9 NC_001650.1 + 33852 0.66 0.929963
Target:  5'- -cUGGCCAGCUggGUCCCaggaaCGAGAUUg -3'
miRNA:   3'- ucACCGGUUGAuaCGGGG-----GUUCUGGu -5'
3749 5' -55.9 NC_001650.1 + 120930 0.66 0.924656
Target:  5'- gGGUGGCCGACaggggAUGCCUgUcaaaGAGgaGCCAg -3'
miRNA:   3'- -UCACCGGUUGa----UACGGGgG----UUC--UGGU- -5'
3749 5' -55.9 NC_001650.1 + 124004 0.66 0.924656
Target:  5'- uGUGGUCAaaaACUAcaugGUCCCCGugcuGACCc -3'
miRNA:   3'- uCACCGGU---UGAUa---CGGGGGUu---CUGGu -5'
3749 5' -55.9 NC_001650.1 + 101826 0.66 0.924112
Target:  5'- -uUGGCCAGCUcgGCCaccgccuCCCu-GAUCAc -3'
miRNA:   3'- ucACCGGUUGAuaCGG-------GGGuuCUGGU- -5'
3749 5' -55.9 NC_001650.1 + 59237 0.66 0.91911
Target:  5'- -cUGGCCAACUGcGCCUgCAGGGaCGa -3'
miRNA:   3'- ucACCGGUUGAUaCGGGgGUUCUgGU- -5'
3749 5' -55.9 NC_001650.1 + 36341 0.66 0.91911
Target:  5'- aGGUGGCCGGggugGUGCCCauagacauguaCCAGGugUg -3'
miRNA:   3'- -UCACCGGUUga--UACGGG-----------GGUUCugGu -5'
3749 5' -55.9 NC_001650.1 + 29211 0.66 0.91911
Target:  5'- cAGUGG-CAGCacGUGCCCCgAAGggugGCCGg -3'
miRNA:   3'- -UCACCgGUUGa-UACGGGGgUUC----UGGU- -5'
3749 5' -55.9 NC_001650.1 + 53552 0.66 0.91911
Target:  5'- cGGcGGCCu----UGCCCCCGGuGACCc -3'
miRNA:   3'- -UCaCCGGuugauACGGGGGUU-CUGGu -5'
3749 5' -55.9 NC_001650.1 + 161700 0.66 0.918542
Target:  5'- gGGUGGCCccggugaAGCUGUGgggCCUCGAGGCgGg -3'
miRNA:   3'- -UCACCGG-------UUGAUACg--GGGGUUCUGgU- -5'
3749 5' -55.9 NC_001650.1 + 131834 0.66 0.918542
Target:  5'- cGGUGGCCGGCc--GCCgacgucaCCCAAGcCCu -3'
miRNA:   3'- -UCACCGGUUGauaCGG-------GGGUUCuGGu -5'
3749 5' -55.9 NC_001650.1 + 74469 0.66 0.913325
Target:  5'- --aGGCCAcCUcgGUCaCCCAcguGACCAg -3'
miRNA:   3'- ucaCCGGUuGAuaCGG-GGGUu--CUGGU- -5'
3749 5' -55.9 NC_001650.1 + 91428 0.66 0.913325
Target:  5'- cGG-GGUCAGCUugaAUGUCUCgAAGACCu -3'
miRNA:   3'- -UCaCCGGUUGA---UACGGGGgUUCUGGu -5'
3749 5' -55.9 NC_001650.1 + 22669 0.66 0.909739
Target:  5'- cAGcGGCCGGCggcugGCCUCCAuccuggcggccguccAGACCu -3'
miRNA:   3'- -UCaCCGGUUGaua--CGGGGGU---------------UCUGGu -5'
3749 5' -55.9 NC_001650.1 + 27756 0.66 0.907302
Target:  5'- --aGGCCAggguggacACUucUGCCCCCAGGcUCAc -3'
miRNA:   3'- ucaCCGGU--------UGAu-ACGGGGGUUCuGGU- -5'
3749 5' -55.9 NC_001650.1 + 168153 0.66 0.907302
Target:  5'- --aGGCCGGCcccccgGCUCCCAuuGGCCGg -3'
miRNA:   3'- ucaCCGGUUGaua---CGGGGGUu-CUGGU- -5'
3749 5' -55.9 NC_001650.1 + 110720 0.66 0.907302
Target:  5'- aGGUGGCgAGCUG-GCCguggcugaggCCCGggGGGCCGu -3'
miRNA:   3'- -UCACCGgUUGAUaCGG----------GGGU--UCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.