miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
376	3'	-59.7	AC_000011.1	+	10147	0.66	0.386771
	Target:  5'- gGCGGCGGCUggcGGUagagcGGCCaucgcucgGUGgcGGGg -3' miRNA:   3'- -CGCCGCCGGaa-CCA-----CCGG--------CACaaCCU- -5'
376	3'	-59.7	AC_000011.1	+	17049	0.66	0.386771
	Target:  5'- gGCGGCGGCgagUGGUGGUCuUGcgGcGGc -3' miRNA:   3'- -CGCCGCCGga-ACCACCGGcACaaC-CU- -5'
376	3'	-59.7	AC_000011.1	+	24387	0.66	0.385874
	Target:  5'- aGCGGCgcaaacucaugauGGCCgugguccUGGUGaCCGUGgagcUGGAg -3' miRNA:   3'- -CGCCG-------------CCGGa------ACCACcGGCACa---ACCU- -5'
376	3'	-59.7	AC_000011.1	+	18018	0.66	0.369099
	Target:  5'- cCGGUGGCCagGGgcgcgaugGGCCGcGUggUGGGc -3' miRNA:   3'- cGCCGCCGGaaCCa-------CCGGCaCA--ACCU- -5'
376	3'	-59.7	AC_000011.1	+	20177	0.66	0.360473
	Target:  5'- cGCaGCauGGCCUcgagcgUGGaGGCCGUGUUGu- -3' miRNA:   3'- -CGcCG--CCGGA------ACCaCCGGCACAACcu -5'
376	3'	-59.7	AC_000011.1	+	9274	0.67	0.311715
	Target:  5'- -aGGCGGCagUGGUGGCgGg---GGAg -3' miRNA:   3'- cgCCGCCGgaACCACCGgCacaaCCU- -5'
376	3'	-59.7	AC_000011.1	+	28006	0.69	0.241899
	Target:  5'- uGCGGUGcGC--UGGUGGCgGUGUUGc- -3' miRNA:   3'- -CGCCGC-CGgaACCACCGgCACAACcu -5'
376	3'	-59.7	AC_000011.1	+	8788	0.71	0.185606
	Target:  5'- cGCGGcCGGCgCgcuccacGGUGGCCGcgaggucGUUGGAg -3' miRNA:   3'- -CGCC-GCCG-Gaa-----CCACCGGCa------CAACCU- -5'
376	3'	-59.7	AC_000011.1	+	10972	0.75	0.095264
	Target:  5'- aCGGCGGCCgcGGcGGUCGUGgcUGGAa -3' miRNA:   3'- cGCCGCCGGaaCCaCCGGCACa-ACCU- -5'
376	3'	-59.7	AC_000011.1	+	32401	1.1	0.000176
	Target:  5'- gGCGGCGGCCUUGGUGGCCGUGUUGGAg -3' miRNA:   3'- -CGCCGCCGGAACCACCGGCACAACCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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