miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
376 5' -58.5 AC_000011.1 + 6632 0.66 0.43283
Target:  5'- cUCCuCGAGGAugccgauguaggUGGGGUagcagCGCCCCCc -3'
miRNA:   3'- aAGG-GCUCCUua----------GCUCCAg----GUGGGGG- -5'
376 5' -58.5 AC_000011.1 + 22817 0.66 0.427042
Target:  5'- -gCCCGAGcagggCGAGGUgUACCgCCg -3'
miRNA:   3'- aaGGGCUCcuua-GCUCCAgGUGGgGG- -5'
376 5' -58.5 AC_000011.1 + 4094 0.66 0.427042
Target:  5'- gUCCCG-GGggUgGAGGUa-GCUCCa -3'
miRNA:   3'- aAGGGCuCCuuAgCUCCAggUGGGGg -5'
376 5' -58.5 AC_000011.1 + 14562 0.66 0.415604
Target:  5'- -gCCCGGGGuguacaccaaCGAGGcuuUCCAUCCCg -3'
miRNA:   3'- aaGGGCUCCuua-------GCUCC---AGGUGGGGg -5'
376 5' -58.5 AC_000011.1 + 22144 0.67 0.363066
Target:  5'- aUCCCGAagGGggUCaucuugcAGGUCUGCCuuCCCa -3'
miRNA:   3'- aAGGGCU--CCuuAGc------UCCAGGUGG--GGG- -5'
376 5' -58.5 AC_000011.1 + 19837 0.68 0.345213
Target:  5'- -cCCCGAuguugauguaGGAGUccaccagCGAGGgcgCCACCaCCCg -3'
miRNA:   3'- aaGGGCU----------CCUUA-------GCUCCa--GGUGG-GGG- -5'
376 5' -58.5 AC_000011.1 + 4865 0.69 0.298487
Target:  5'- cUCCCgGAGGAGg-GGGG-CCACCUCg -3'
miRNA:   3'- aAGGG-CUCCUUagCUCCaGGUGGGGg -5'
376 5' -58.5 AC_000011.1 + 9255 0.69 0.283799
Target:  5'- cUCCCGGGGGccuucgagcgCGAGGUgCGCgCCaCCa -3'
miRNA:   3'- aAGGGCUCCUua--------GCUCCAgGUG-GG-GG- -5'
376 5' -58.5 AC_000011.1 + 25509 0.7 0.230746
Target:  5'- cUCaCCGgucuGGGggUCGAGGUagACCCCg -3'
miRNA:   3'- aAG-GGC----UCCuuAGCUCCAggUGGGGg -5'
376 5' -58.5 AC_000011.1 + 13007 0.71 0.218859
Target:  5'- gUUCCUGAugcaGGAG--GGGG-CCACCCCCa -3'
miRNA:   3'- -AAGGGCU----CCUUagCUCCaGGUGGGGG- -5'
376 5' -58.5 AC_000011.1 + 4680 0.71 0.213115
Target:  5'- -gCCCccGGGAUCGAGGguaCCuuuguCCCCCa -3'
miRNA:   3'- aaGGGcuCCUUAGCUCCa--GGu----GGGGG- -5'
376 5' -58.5 AC_000011.1 + 8942 0.74 0.126501
Target:  5'- aUCCCGAGGGcGUCGuGGUCUACagCCg -3'
miRNA:   3'- aAGGGCUCCU-UAGCuCCAGGUGggGG- -5'
376 5' -58.5 AC_000011.1 + 32367 1.09 0.000299
Target:  5'- uUUCCCGAGGAAUCGAGGUCCACCCCCu -3'
miRNA:   3'- -AAGGGCUCCUUAGCUCCAGGUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.