Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3766 | 3' | -50.2 | NC_001650.1 | + | 58830 | 0.66 | 0.998803 |
Target: 5'- gGGAU--CG-GGCCCGGGAGagGCAGAu -3' miRNA: 3'- -CCUAucGCaCUGGGCCUUUgaUGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 162255 | 0.66 | 0.998803 |
Target: 5'- cGAggGGCGUGAagcccagguagCCGGggGucCUGCAGAa -3' miRNA: 3'- cCUa-UCGCACUg----------GGCCuuU--GAUGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 79199 | 0.66 | 0.998803 |
Target: 5'- ---gGGCGcuggagGACCCGGggGCUGuUAGAg -3' miRNA: 3'- ccuaUCGCa-----CUGGGCCuuUGAU-GUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 37208 | 0.66 | 0.998803 |
Target: 5'- aGAgGGgGUGACCCccgaGggGCUgGCAGAc -3' miRNA: 3'- cCUaUCgCACUGGGc---CuuUGA-UGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 42359 | 0.66 | 0.998386 |
Target: 5'- uGGAgcgAGCGUgggaaaauuugugggGACCgUGGGAACUuuGCGGGg -3' miRNA: 3'- -CCUa--UCGCA---------------CUGG-GCCUUUGA--UGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 69964 | 0.66 | 0.998265 |
Target: 5'- aGGAgacucgAGgGUGACgccauggagCCGGugGCUAUAGAg -3' miRNA: 3'- -CCUa-----UCgCACUG---------GGCCuuUGAUGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 63240 | 0.66 | 0.997927 |
Target: 5'- gGGAggucucCGUGACCaCGGAGACgggcgcgaACAGGu -3' miRNA: 3'- -CCUauc---GCACUGG-GCCUUUGa-------UGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 27906 | 0.66 | 0.997853 |
Target: 5'- gGGGUGGCGggggccuacaacGACCUGGAcAUaGCGGGc -3' miRNA: 3'- -CCUAUCGCa-----------CUGGGCCUuUGaUGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 111693 | 0.66 | 0.997536 |
Target: 5'- aGGAUGGgGUcggccccguuGACCgCGGggGCguacACGGGc -3' miRNA: 3'- -CCUAUCgCA----------CUGG-GCCuuUGa---UGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 115213 | 0.67 | 0.997085 |
Target: 5'- aGGccuGCacaGGCCCGGccGCUGCAGAa -3' miRNA: 3'- -CCuauCGca-CUGGGCCuuUGAUGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 86611 | 0.67 | 0.997085 |
Target: 5'- aGGAUgcugGGCcc-GCUCGGGGACUGCAGc -3' miRNA: 3'- -CCUA----UCGcacUGGGCCUUUGAUGUCu -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 109840 | 0.67 | 0.997085 |
Target: 5'- aGGAUGGCcaggGUGGCCuCGGAGAgguaGGAg -3' miRNA: 3'- -CCUAUCG----CACUGG-GCCUUUgaugUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 26210 | 0.67 | 0.997085 |
Target: 5'- ---cAGCGUGGCCuCGG--GCUACgAGGa -3' miRNA: 3'- ccuaUCGCACUGG-GCCuuUGAUG-UCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 61793 | 0.67 | 0.997085 |
Target: 5'- aGGGgacGCGcagGuGCCCGGAGGCggACAGGu -3' miRNA: 3'- -CCUau-CGCa--C-UGGGCCUUUGa-UGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 87978 | 0.67 | 0.996567 |
Target: 5'- aGGAUgaccAGC--GACCCGGggGCgccCAGGc -3' miRNA: 3'- -CCUA----UCGcaCUGGGCCuuUGau-GUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 127062 | 0.67 | 0.995977 |
Target: 5'- cGAgggGGCGccgGGCCCGGGGucuccACUAguGAa -3' miRNA: 3'- cCUa--UCGCa--CUGGGCCUU-----UGAUguCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 86376 | 0.67 | 0.995376 |
Target: 5'- uGGUGGcCGUGACCCGGGcgagggcgaugcuuCUGgGGAc -3' miRNA: 3'- cCUAUC-GCACUGGGCCUuu------------GAUgUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 67424 | 0.67 | 0.995305 |
Target: 5'- aGGGUGGCGaUGAggagcCCCGGu--CUcCAGAg -3' miRNA: 3'- -CCUAUCGC-ACU-----GGGCCuuuGAuGUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 141444 | 0.67 | 0.994545 |
Target: 5'- cGGGUGGCG-GGCCagccagaGGGAGCgagAgGGAc -3' miRNA: 3'- -CCUAUCGCaCUGGg------CCUUUGa--UgUCU- -5' |
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3766 | 3' | -50.2 | NC_001650.1 | + | 132905 | 0.67 | 0.994545 |
Target: 5'- cGGUGGCGcccGCuCCGcGAGACUACAGc -3' miRNA: 3'- cCUAUCGCac-UG-GGC-CUUUGAUGUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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