miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3766 3' -50.2 NC_001650.1 + 57359 1.12 0.008738
Target:  5'- uGGAUAGCGUGACCCGGAAACUACAGAg -3'
miRNA:   3'- -CCUAUCGCACUGGGCCUUUGAUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 123080 0.8 0.561113
Target:  5'- gGGGcGGCGgggGACCCGGggGCgGCGGGg -3'
miRNA:   3'- -CCUaUCGCa--CUGGGCCuuUGaUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 128062 0.77 0.756386
Target:  5'- cGGUGGCG-GACCCGaGggGCUacGCGGGg -3'
miRNA:   3'- cCUAUCGCaCUGGGC-CuuUGA--UGUCU- -5'
3766 3' -50.2 NC_001650.1 + 27253 0.73 0.898528
Target:  5'- uGGAcAGUGUGGCCaCGGAgcuggccgugAGCUACGGc -3'
miRNA:   3'- -CCUaUCGCACUGG-GCCU----------UUGAUGUCu -5'
3766 3' -50.2 NC_001650.1 + 70830 0.73 0.904997
Target:  5'- -aAUGGgGUGACCUGcGAAACUACAa- -3'
miRNA:   3'- ccUAUCgCACUGGGC-CUUUGAUGUcu -5'
3766 3' -50.2 NC_001650.1 + 92922 0.72 0.922932
Target:  5'- cGAUAGUGggcagGAUCCGGggGCUgGCGGc -3'
miRNA:   3'- cCUAUCGCa----CUGGGCCuuUGA-UGUCu -5'
3766 3' -50.2 NC_001650.1 + 172998 0.71 0.947864
Target:  5'- ---gGGCGUGGCagaGGAAGCUugAGGa -3'
miRNA:   3'- ccuaUCGCACUGgg-CCUUUGAugUCU- -5'
3766 3' -50.2 NC_001650.1 + 6291 0.71 0.947864
Target:  5'- ---gGGCGUGGCagaGGAAGCUugAGGa -3'
miRNA:   3'- ccuaUCGCACUGgg-CCUUUGAugUCU- -5'
3766 3' -50.2 NC_001650.1 + 19584 0.71 0.957665
Target:  5'- cGGGUGccGCGcGGCCCGGGgcggcguuccgcucgGGCUGCAGc -3'
miRNA:   3'- -CCUAU--CGCaCUGGGCCU---------------UUGAUGUCu -5'
3766 3' -50.2 NC_001650.1 + 129978 0.71 0.959903
Target:  5'- -cGUGGCGcgGGCCCuGAGGCUGCuGAg -3'
miRNA:   3'- ccUAUCGCa-CUGGGcCUUUGAUGuCU- -5'
3766 3' -50.2 NC_001650.1 + 49923 0.7 0.966771
Target:  5'- cGGGUAGUcUGGCCCugGGggGCcugGCGGGc -3'
miRNA:   3'- -CCUAUCGcACUGGG--CCuuUGa--UGUCU- -5'
3766 3' -50.2 NC_001650.1 + 58956 0.7 0.967091
Target:  5'- gGGAggcGGCGgcggcuucuggcacgGGCCCGGGAGgaGCAGGg -3'
miRNA:   3'- -CCUa--UCGCa--------------CUGGGCCUUUgaUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 57235 0.7 0.972763
Target:  5'- cGGAUGGgacuCGUGAaCCGGGAGCUGuuGAc -3'
miRNA:   3'- -CCUAUC----GCACUgGGCCUUUGAUguCU- -5'
3766 3' -50.2 NC_001650.1 + 126155 0.7 0.973861
Target:  5'- aGGAUcucaucAGCGUGcCCCGGAGcacguucaugaccauGCUcCAGAc -3'
miRNA:   3'- -CCUA------UCGCACuGGGCCUU---------------UGAuGUCU- -5'
3766 3' -50.2 NC_001650.1 + 141761 0.7 0.977932
Target:  5'- aGGGUAGCauaGcCCCGGGuagaguucGCUGCAGAg -3'
miRNA:   3'- -CCUAUCGca-CuGGGCCUu-------UGAUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 25670 0.69 0.980227
Target:  5'- uGGGccgGGUGcUGACCCuGAuaGACUGCAGGa -3'
miRNA:   3'- -CCUa--UCGC-ACUGGGcCU--UUGAUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 36400 0.69 0.982339
Target:  5'- gGGGUAGUGggcuagggGGCCCGGGcgucGCgGCAGGc -3'
miRNA:   3'- -CCUAUCGCa-------CUGGGCCUu---UGaUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 69943 0.69 0.984277
Target:  5'- cGAUGGCGgccuucggGACCgGGAuGCUGgGGGc -3'
miRNA:   3'- cCUAUCGCa-------CUGGgCCUuUGAUgUCU- -5'
3766 3' -50.2 NC_001650.1 + 104821 0.69 0.984277
Target:  5'- ---gGGCGccGCCCGGggGCgcgACGGGg -3'
miRNA:   3'- ccuaUCGCacUGGGCCuuUGa--UGUCU- -5'
3766 3' -50.2 NC_001650.1 + 22371 0.68 0.98913
Target:  5'- uGGGcAGCGgggagGACCCGuucgcGCUGCAGGa -3'
miRNA:   3'- -CCUaUCGCa----CUGGGCcuu--UGAUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.