miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3766 3' -50.2 NC_001650.1 + 128062 0.77 0.756386
Target:  5'- cGGUGGCG-GACCCGaGggGCUacGCGGGg -3'
miRNA:   3'- cCUAUCGCaCUGGGC-CuuUGA--UGUCU- -5'
3766 3' -50.2 NC_001650.1 + 127062 0.67 0.995977
Target:  5'- cGAgggGGCGccgGGCCCGGGGucuccACUAguGAa -3'
miRNA:   3'- cCUa--UCGCa--CUGGGCCUU-----UGAUguCU- -5'
3766 3' -50.2 NC_001650.1 + 86611 0.67 0.997085
Target:  5'- aGGAUgcugGGCcc-GCUCGGGGACUGCAGc -3'
miRNA:   3'- -CCUA----UCGcacUGGGCCUUUGAUGUCu -5'
3766 3' -50.2 NC_001650.1 + 115213 0.67 0.997085
Target:  5'- aGGccuGCacaGGCCCGGccGCUGCAGAa -3'
miRNA:   3'- -CCuauCGca-CUGGGCCuuUGAUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 27906 0.66 0.997853
Target:  5'- gGGGUGGCGggggccuacaacGACCUGGAcAUaGCGGGc -3'
miRNA:   3'- -CCUAUCGCa-----------CUGGGCCUuUGaUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 69964 0.66 0.998265
Target:  5'- aGGAgacucgAGgGUGACgccauggagCCGGugGCUAUAGAg -3'
miRNA:   3'- -CCUa-----UCgCACUG---------GGCCuuUGAUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 37208 0.66 0.998803
Target:  5'- aGAgGGgGUGACCCccgaGggGCUgGCAGAc -3'
miRNA:   3'- cCUaUCgCACUGGGc---CuuUGA-UGUCU- -5'
3766 3' -50.2 NC_001650.1 + 58830 0.66 0.998803
Target:  5'- gGGAU--CG-GGCCCGGGAGagGCAGAu -3'
miRNA:   3'- -CCUAucGCaCUGGGCCUUUgaUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 79199 0.66 0.998803
Target:  5'- ---gGGCGcuggagGACCCGGggGCUGuUAGAg -3'
miRNA:   3'- ccuaUCGCa-----CUGGGCCuuUGAU-GUCU- -5'
3766 3' -50.2 NC_001650.1 + 141444 0.67 0.994545
Target:  5'- cGGGUGGCG-GGCCagccagaGGGAGCgagAgGGAc -3'
miRNA:   3'- -CCUAUCGCaCUGGg------CCUUUGa--UgUCU- -5'
3766 3' -50.2 NC_001650.1 + 132905 0.67 0.994545
Target:  5'- cGGUGGCGcccGCuCCGcGAGACUACAGc -3'
miRNA:   3'- cCUAUCGCac-UG-GGC-CUUUGAUGUCu -5'
3766 3' -50.2 NC_001650.1 + 27253 0.73 0.898528
Target:  5'- uGGAcAGUGUGGCCaCGGAgcuggccgugAGCUACGGc -3'
miRNA:   3'- -CCUaUCGCACUGG-GCCU----------UUGAUGUCu -5'
3766 3' -50.2 NC_001650.1 + 92922 0.72 0.922932
Target:  5'- cGAUAGUGggcagGAUCCGGggGCUgGCGGc -3'
miRNA:   3'- cCUAUCGCa----CUGGGCCuuUGA-UGUCu -5'
3766 3' -50.2 NC_001650.1 + 129978 0.71 0.959903
Target:  5'- -cGUGGCGcgGGCCCuGAGGCUGCuGAg -3'
miRNA:   3'- ccUAUCGCa-CUGGGcCUUUGAUGuCU- -5'
3766 3' -50.2 NC_001650.1 + 58956 0.7 0.967091
Target:  5'- gGGAggcGGCGgcggcuucuggcacgGGCCCGGGAGgaGCAGGg -3'
miRNA:   3'- -CCUa--UCGCa--------------CUGGGCCUUUgaUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 22371 0.68 0.98913
Target:  5'- uGGGcAGCGgggagGACCCGuucgcGCUGCAGGa -3'
miRNA:   3'- -CCUaUCGCa----CUGGGCcuu--UGAUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 136808 0.68 0.990202
Target:  5'- aGAUGGCgGUGACCCucuugggguucuuGGccuugaccaccagGAACUGCAGGg -3'
miRNA:   3'- cCUAUCG-CACUGGG-------------CC-------------UUUGAUGUCU- -5'
3766 3' -50.2 NC_001650.1 + 140256 0.68 0.990457
Target:  5'- uGGGcucAGCccGGCCCGGGAGCUccaccgGCGGAu -3'
miRNA:   3'- -CCUa--UCGcaCUGGGCCUUUGA------UGUCU- -5'
3766 3' -50.2 NC_001650.1 + 67278 0.68 0.992727
Target:  5'- gGGAUcGCGuUGguggggcuGCCCGGGAACUuggagaagaGCAGGg -3'
miRNA:   3'- -CCUAuCGC-AC--------UGGGCCUUUGA---------UGUCU- -5'
3766 3' -50.2 NC_001650.1 + 162255 0.66 0.998803
Target:  5'- cGAggGGCGUGAagcccagguagCCGGggGucCUGCAGAa -3'
miRNA:   3'- cCUa-UCGCACUg----------GGCCuuU--GAUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.