miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3768 5' -57.7 NC_001650.1 + 172103 0.66 0.899458
Target:  5'- gGGUg--UGuGCCaggggGGuuuGGGGUgGGGCCa -3'
miRNA:   3'- -CCAagaAC-CGGaa---CCu--CCCCA-CCCGG- -5'
3768 5' -57.7 NC_001650.1 + 5396 0.66 0.899458
Target:  5'- gGGUg--UGuGCCaggggGGuuuGGGGUgGGGCCa -3'
miRNA:   3'- -CCAagaAC-CGGaa---CCu--CCCCA-CCCGG- -5'
3768 5' -57.7 NC_001650.1 + 30909 0.66 0.899458
Target:  5'- uGGagCUcGGCCgcGGAcaGGGGcgGGGUCg -3'
miRNA:   3'- -CCaaGAaCCGGaaCCU--CCCCa-CCCGG- -5'
3768 5' -57.7 NC_001650.1 + 72894 0.66 0.893095
Target:  5'- uGGgcag-GGCCUccaGGGGaaaGGGUGGGCa -3'
miRNA:   3'- -CCaagaaCCGGAa--CCUC---CCCACCCGg -5'
3768 5' -57.7 NC_001650.1 + 172637 0.66 0.893095
Target:  5'- -cUUCaUUGGCCaUGGGGuGaGUGGGCa -3'
miRNA:   3'- ccAAG-AACCGGaACCUCcC-CACCCGg -5'
3768 5' -57.7 NC_001650.1 + 49924 0.66 0.893095
Target:  5'- gGGUagUC-UGGCCcUGGGGGGccuggcGGGCg -3'
miRNA:   3'- -CCA--AGaACCGGaACCUCCCca----CCCGg -5'
3768 5' -57.7 NC_001650.1 + 31007 0.66 0.886516
Target:  5'- aGGagCagGGCCUggcUGGGGcGGG-GGGCg -3'
miRNA:   3'- -CCaaGaaCCGGA---ACCUC-CCCaCCCGg -5'
3768 5' -57.7 NC_001650.1 + 147406 0.66 0.886516
Target:  5'- aGGUUgUgGGCCUggaugaUGGuGGGGUacaGGCUg -3'
miRNA:   3'- -CCAAgAaCCGGA------ACCuCCCCAc--CCGG- -5'
3768 5' -57.7 NC_001650.1 + 131370 0.66 0.879723
Target:  5'- cGGgaCUcUGGCCaagaGGcuGGGGGUGGaGCUg -3'
miRNA:   3'- -CCaaGA-ACCGGaa--CC--UCCCCACC-CGG- -5'
3768 5' -57.7 NC_001650.1 + 19317 0.66 0.872723
Target:  5'- cGGUgg--GGCCc--GGGGGGUGGGgUg -3'
miRNA:   3'- -CCAagaaCCGGaacCUCCCCACCCgG- -5'
3768 5' -57.7 NC_001650.1 + 14615 0.66 0.872723
Target:  5'- ---cCUgGGCCaauagggUGGgcuaGGGGGUGGGCa -3'
miRNA:   3'- ccaaGAaCCGGa------ACC----UCCCCACCCGg -5'
3768 5' -57.7 NC_001650.1 + 181322 0.66 0.872723
Target:  5'- ---cCUgGGCCaauagggUGGgcuaGGGGGUGGGCa -3'
miRNA:   3'- ccaaGAaCCGGa------ACC----UCCCCACCCGg -5'
3768 5' -57.7 NC_001650.1 + 3364 0.66 0.872723
Target:  5'- uGGUUacaacgGGCCacgUGGGGcGGG-GcGGCCa -3'
miRNA:   3'- -CCAAgaa---CCGGa--ACCUC-CCCaC-CCGG- -5'
3768 5' -57.7 NC_001650.1 + 170071 0.66 0.872723
Target:  5'- uGGUUacaacgGGCCacgUGGGGcGGG-GcGGCCa -3'
miRNA:   3'- -CCAAgaa---CCGGa--ACCUC-CCCaC-CCGG- -5'
3768 5' -57.7 NC_001650.1 + 166726 0.66 0.872011
Target:  5'- --aUUUgGGCCUgagaaaaUGGAGGGGgcguGGCCc -3'
miRNA:   3'- ccaAGAaCCGGA-------ACCUCCCCac--CCGG- -5'
3768 5' -57.7 NC_001650.1 + 19 0.66 0.872011
Target:  5'- --aUUUgGGCCUgagaaaaUGGAGGGGgcguGGCCc -3'
miRNA:   3'- ccaAGAaCCGGA-------ACCUCCCCac--CCGG- -5'
3768 5' -57.7 NC_001650.1 + 111676 0.66 0.865518
Target:  5'- cGUUCUccaggUGGUCcaGGAuGGGGUcGGCCc -3'
miRNA:   3'- cCAAGA-----ACCGGaaCCU-CCCCAcCCGG- -5'
3768 5' -57.7 NC_001650.1 + 38298 0.67 0.858114
Target:  5'- cGGggUCcccgUGGCCaaacggcggugUGGGGGGcUGGGCUg -3'
miRNA:   3'- -CCa-AGa---ACCGGa----------ACCUCCCcACCCGG- -5'
3768 5' -57.7 NC_001650.1 + 35282 0.67 0.858114
Target:  5'- cGGggCg-GGCCggGGAcGGGcGcGGGCCa -3'
miRNA:   3'- -CCaaGaaCCGGaaCCU-CCC-CaCCCGG- -5'
3768 5' -57.7 NC_001650.1 + 95715 0.67 0.858114
Target:  5'- ---cUUUGGCC--GGAGGGGguuuGGCCc -3'
miRNA:   3'- ccaaGAACCGGaaCCUCCCCac--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.