miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
377 3' -62.4 AC_000011.1 + 23516 0.66 0.274671
Target:  5'- gGUGGCGG-GGCUggGCgGCGGGGCg--- -3'
miRNA:   3'- -CGCCGUCgCUGA--CGaCGCCCCGgacu -5'
377 3' -62.4 AC_000011.1 + 14902 0.66 0.267841
Target:  5'- uCGGCcgcuGCcACUGCUGCGGcGCUUGc -3'
miRNA:   3'- cGCCGu---CGcUGACGACGCCcCGGACu -5'
377 3' -62.4 AC_000011.1 + 15258 0.66 0.267841
Target:  5'- -aGGCGcGCaGCUGCUGCGaguagacGGCCUGc -3'
miRNA:   3'- cgCCGU-CGcUGACGACGCc------CCGGACu -5'
377 3' -62.4 AC_000011.1 + 20027 0.66 0.254593
Target:  5'- uCGGCAaCGAcCUGCgcacgGaCGGGGCCUc- -3'
miRNA:   3'- cGCCGUcGCU-GACGa----C-GCCCCGGAcu -5'
377 3' -62.4 AC_000011.1 + 21302 0.67 0.229122
Target:  5'- cGCGGcCGGCcguguuGACgaugGCgcaggccagcuugUGCGGGGCCaUGAa -3'
miRNA:   3'- -CGCC-GUCG------CUGa---CG-------------ACGCCCCGG-ACU- -5'
377 3' -62.4 AC_000011.1 + 9465 0.67 0.206924
Target:  5'- cGCGGCGGCGuCUucacGCUGCGGccccGCgaGGa -3'
miRNA:   3'- -CGCCGUCGCuGA----CGACGCCc---CGgaCU- -5'
377 3' -62.4 AC_000011.1 + 10399 0.67 0.20154
Target:  5'- aGCGGuCAGCGGCUcGaCUcCGuGGCCUGGa -3'
miRNA:   3'- -CGCC-GUCGCUGA-C-GAcGCcCCGGACU- -5'
377 3' -62.4 AC_000011.1 + 17832 0.67 0.20154
Target:  5'- gGCGGCaccggguccaGGCGGCUguugaucugccGCUGCacGGCCUGGu -3'
miRNA:   3'- -CGCCG----------UCGCUGA-----------CGACGccCCGGACU- -5'
377 3' -62.4 AC_000011.1 + 10964 0.67 0.20154
Target:  5'- cGCGGCGGuCGuggcuggaaguuGCUGCUgggGCGGGGgCaGAa -3'
miRNA:   3'- -CGCCGUC-GC------------UGACGA---CGCCCCgGaCU- -5'
377 3' -62.4 AC_000011.1 + 9275 0.69 0.149973
Target:  5'- gGCGGCAGUGGugGCggggGagGGGGCCUGc -3'
miRNA:   3'- -CGCCGUCGCUgaCGa---Cg-CCCCGGACu -5'
377 3' -62.4 AC_000011.1 + 10144 0.7 0.138148
Target:  5'- uGCGGCGGCGGCUG--GCGGuagagcGGCCa-- -3'
miRNA:   3'- -CGCCGUCGCUGACgaCGCC------CCGGacu -5'
377 3' -62.4 AC_000011.1 + 16596 0.7 0.1344
Target:  5'- uCGGCAGCacCUGCUGCaaggucacGGGCUUGAg -3'
miRNA:   3'- cGCCGUCGcuGACGACGc-------CCCGGACU- -5'
377 3' -62.4 AC_000011.1 + 17049 0.71 0.117031
Target:  5'- gGCGGCGGCGAgugguggucUUGCgGCGGcGGCugCUGGu -3'
miRNA:   3'- -CGCCGUCGCU---------GACGaCGCC-CCG--GACU- -5'
377 3' -62.4 AC_000011.1 + 15821 0.71 0.101772
Target:  5'- cGCGGC-GCGAgccUUGCUGCGcaGGGCCa-- -3'
miRNA:   3'- -CGCCGuCGCU---GACGACGC--CCCGGacu -5'
377 3' -62.4 AC_000011.1 + 11123 0.76 0.041582
Target:  5'- cGCGGCccgguuccacgcggGGCGGgaGCUGCGGcgcGGCCUGGa -3'
miRNA:   3'- -CGCCG--------------UCGCUgaCGACGCC---CCGGACU- -5'
377 3' -62.4 AC_000011.1 + 8478 0.77 0.035238
Target:  5'- gGCGGCAGgGGCgGCU-CGGGGCCcgGAg -3'
miRNA:   3'- -CGCCGUCgCUGaCGAcGCCCCGGa-CU- -5'
377 3' -62.4 AC_000011.1 + 33865 1.09 9.9e-05
Target:  5'- gGCGGCAGCGACUGCUGCGGGGCCUGAu -3'
miRNA:   3'- -CGCCGUCGCUGACGACGCCCCGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.