miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3771 3' -59.7 NC_001650.1 + 110731 0.66 0.789292
Target:  5'- uGGCCgugGCUGAGGC---CCGGGGggCCGu -3'
miRNA:   3'- gUCGG---UGACUCCGaugGGUCCCa-GGU- -5'
3771 3' -59.7 NC_001650.1 + 56807 0.66 0.789292
Target:  5'- aCAGCCuCUc--GCUGCCCA-GGUCCGg -3'
miRNA:   3'- -GUCGGuGAcucCGAUGGGUcCCAGGU- -5'
3771 3' -59.7 NC_001650.1 + 162663 0.66 0.789292
Target:  5'- aGGCCucgGAGGg-ACCCccGGGUCCAc -3'
miRNA:   3'- gUCGGugaCUCCgaUGGGu-CCCAGGU- -5'
3771 3' -59.7 NC_001650.1 + 141225 0.66 0.789292
Target:  5'- uCGGgCGCaucGGgaGCCCGGGGUCCc -3'
miRNA:   3'- -GUCgGUGacuCCgaUGGGUCCCAGGu -5'
3771 3' -59.7 NC_001650.1 + 131131 0.66 0.789292
Target:  5'- -cGCCcCUGAGaCUggcGCCCAGGcuGUCCAu -3'
miRNA:   3'- guCGGuGACUCcGA---UGGGUCC--CAGGU- -5'
3771 3' -59.7 NC_001650.1 + 52619 0.66 0.789292
Target:  5'- gGGCCACU--GGC--CCgGGGGUCCu -3'
miRNA:   3'- gUCGGUGAcuCCGauGGgUCCCAGGu -5'
3771 3' -59.7 NC_001650.1 + 62873 0.66 0.788402
Target:  5'- gAGCCAg-GGGGCUccggagcACCCGGGGgcgcgacccCCAg -3'
miRNA:   3'- gUCGGUgaCUCCGA-------UGGGUCCCa--------GGU- -5'
3771 3' -59.7 NC_001650.1 + 43956 0.66 0.788402
Target:  5'- -cGCCGgUGgagcucccgggccGGGCUgaGCCCAGGGUUa- -3'
miRNA:   3'- guCGGUgAC-------------UCCGA--UGGGUCCCAGgu -5'
3771 3' -59.7 NC_001650.1 + 63918 0.66 0.78033
Target:  5'- gAGCCGCUG-GGCgagccugUCCAGGGacgCCu -3'
miRNA:   3'- gUCGGUGACuCCGau-----GGGUCCCa--GGu -5'
3771 3' -59.7 NC_001650.1 + 129619 0.66 0.78033
Target:  5'- aAGCCAgguccaaaaucCaGGGGUagcgUGCCgGGGGUCCAa -3'
miRNA:   3'- gUCGGU-----------GaCUCCG----AUGGgUCCCAGGU- -5'
3771 3' -59.7 NC_001650.1 + 77953 0.66 0.78033
Target:  5'- gCGGCUGC-GAGGC-ACCgAGGGgCCGu -3'
miRNA:   3'- -GUCGGUGaCUCCGaUGGgUCCCaGGU- -5'
3771 3' -59.7 NC_001650.1 + 111514 0.66 0.779426
Target:  5'- uGGCCcucuCguggGuGGCgaccgccUGCCCAGGGUCCc -3'
miRNA:   3'- gUCGGu---Ga---CuCCG-------AUGGGUCCCAGGu -5'
3771 3' -59.7 NC_001650.1 + 43158 0.66 0.771241
Target:  5'- gAGUCACggGGGGauuUCCAGGGUCUc -3'
miRNA:   3'- gUCGGUGa-CUCCgauGGGUCCCAGGu -5'
3771 3' -59.7 NC_001650.1 + 158263 0.66 0.762034
Target:  5'- gCGGCCGugGAGGCcuggaUGCCCAGGGg-CAu -3'
miRNA:   3'- -GUCGGUgaCUCCG-----AUGGGUCCCagGU- -5'
3771 3' -59.7 NC_001650.1 + 21541 0.66 0.762034
Target:  5'- gGGCCgcgGCUGcGGUggACCCGGGGgucgCCu -3'
miRNA:   3'- gUCGG---UGACuCCGa-UGGGUCCCa---GGu -5'
3771 3' -59.7 NC_001650.1 + 49182 0.66 0.762034
Target:  5'- uGGCCGCUGAGGUggccGCCCuggagagaAGGGa--- -3'
miRNA:   3'- gUCGGUGACUCCGa---UGGG--------UCCCaggu -5'
3771 3' -59.7 NC_001650.1 + 120087 0.66 0.762034
Target:  5'- aUAGCC-CUGAGGUcccUGCCCAGc-UCCGa -3'
miRNA:   3'- -GUCGGuGACUCCG---AUGGGUCccAGGU- -5'
3771 3' -59.7 NC_001650.1 + 117921 0.66 0.762034
Target:  5'- uGGCguaGCUGAuGGCguUGCCCuGGGUCUc -3'
miRNA:   3'- gUCGg--UGACU-CCG--AUGGGuCCCAGGu -5'
3771 3' -59.7 NC_001650.1 + 87269 0.66 0.749904
Target:  5'- uGGCCaaACUGAGGaccucuacggugguCUACCCGGGGg--- -3'
miRNA:   3'- gUCGG--UGACUCC--------------GAUGGGUCCCaggu -5'
3771 3' -59.7 NC_001650.1 + 76873 0.66 0.748963
Target:  5'- gGGCagagauagauaUGGGGCUGCCCccgGGGGUCUc -3'
miRNA:   3'- gUCGgug--------ACUCCGAUGGG---UCCCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.