miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3771 5' -50.4 NC_001650.1 + 113887 0.66 0.997977
Target:  5'- aGGUAGugcaCCGUGGUGGCCG-UGAa- -3'
miRNA:   3'- -CUAUUuag-GGUAUCACCGGCgACUcc -5'
3771 5' -50.4 NC_001650.1 + 70559 0.66 0.99759
Target:  5'- cAUGGAgcugUgCGUGGUGGCCGUcaugacggUGGGGu -3'
miRNA:   3'- cUAUUUa---GgGUAUCACCGGCG--------ACUCC- -5'
3771 5' -50.4 NC_001650.1 + 82807 0.66 0.996628
Target:  5'- uGAUGAG-CUCGU--UGGCC-CUGAGGg -3'
miRNA:   3'- -CUAUUUaGGGUAucACCGGcGACUCC- -5'
3771 5' -50.4 NC_001650.1 + 68203 0.66 0.996039
Target:  5'- gGAUAGGggCCCucuuUAGggaGGCCGUgGAGGu -3'
miRNA:   3'- -CUAUUUa-GGGu---AUCa--CCGGCGaCUCC- -5'
3771 5' -50.4 NC_001650.1 + 83439 0.67 0.995369
Target:  5'- ----cAUCCCGgacgAGgcGGCCGUcuUGAGGg -3'
miRNA:   3'- cuauuUAGGGUa---UCa-CCGGCG--ACUCC- -5'
3771 5' -50.4 NC_001650.1 + 114533 0.67 0.995369
Target:  5'- ------cCCCGUGGUGGUCGagaaugaaGAGGg -3'
miRNA:   3'- cuauuuaGGGUAUCACCGGCga------CUCC- -5'
3771 5' -50.4 NC_001650.1 + 108208 0.67 0.99461
Target:  5'- uGGUAGuggUgGUGGUGGCCGCUGuaguGGu -3'
miRNA:   3'- -CUAUUuagGgUAUCACCGGCGACu---CC- -5'
3771 5' -50.4 NC_001650.1 + 75385 0.67 0.99279
Target:  5'- ----cGUCCuCAUccgcGGUGG-CGCUGGGGg -3'
miRNA:   3'- cuauuUAGG-GUA----UCACCgGCGACUCC- -5'
3771 5' -50.4 NC_001650.1 + 10716 0.68 0.986072
Target:  5'- gGGUAAcuAUCCC--AGUGGCCcaaUGGGGg -3'
miRNA:   3'- -CUAUU--UAGGGuaUCACCGGcg-ACUCC- -5'
3771 5' -50.4 NC_001650.1 + 177423 0.68 0.986072
Target:  5'- gGGUAAcuAUCCC--AGUGGCCcaaUGGGGg -3'
miRNA:   3'- -CUAUU--UAGGGuaUCACCGGcg-ACUCC- -5'
3771 5' -50.4 NC_001650.1 + 27863 0.7 0.966568
Target:  5'- ------cCCCGUGGUGGCCuCggucagGAGGg -3'
miRNA:   3'- cuauuuaGGGUAUCACCGGcGa-----CUCC- -5'
3771 5' -50.4 NC_001650.1 + 129971 0.71 0.941868
Target:  5'- --aGGcgCCCGUGGcgcgggcccugaGGCUGCUGAGGg -3'
miRNA:   3'- cuaUUuaGGGUAUCa-----------CCGGCGACUCC- -5'
3771 5' -50.4 NC_001650.1 + 57349 0.71 0.937996
Target:  5'- uGUGGcgCCgCcUGGUGGCCGUUGuGGg -3'
miRNA:   3'- cUAUUuaGG-GuAUCACCGGCGACuCC- -5'
3771 5' -50.4 NC_001650.1 + 149109 0.71 0.93293
Target:  5'- uGGUAuAUUCCuUGGUcGGCCGC-GAGGg -3'
miRNA:   3'- -CUAUuUAGGGuAUCA-CCGGCGaCUCC- -5'
3771 5' -50.4 NC_001650.1 + 145389 0.72 0.927609
Target:  5'- ----cAUCuCCAUGGggaUGGCCGCgUGGGGg -3'
miRNA:   3'- cuauuUAG-GGUAUC---ACCGGCG-ACUCC- -5'
3771 5' -50.4 NC_001650.1 + 94848 0.72 0.916208
Target:  5'- --aAGAUgCCCGUGGUGGUgGUcGAGGa -3'
miRNA:   3'- cuaUUUA-GGGUAUCACCGgCGaCUCC- -5'
3771 5' -50.4 NC_001650.1 + 172469 0.73 0.890397
Target:  5'- --gGGGUCCC--GGUGGUCGCggUGAGGu -3'
miRNA:   3'- cuaUUUAGGGuaUCACCGGCG--ACUCC- -5'
3771 5' -50.4 NC_001650.1 + 5762 0.73 0.890397
Target:  5'- --gGGGUCCC--GGUGGUCGCggUGAGGu -3'
miRNA:   3'- cuaUUUAGGGuaUCACCGGCG--ACUCC- -5'
3771 5' -50.4 NC_001650.1 + 65258 0.74 0.852768
Target:  5'- --aGGAUCUUGUGGgcGGCCGCUGAGa -3'
miRNA:   3'- cuaUUUAGGGUAUCa-CCGGCGACUCc -5'
3771 5' -50.4 NC_001650.1 + 181757 0.74 0.827598
Target:  5'- --aAGAUgCCAgcG-GGCCGCUGGGGg -3'
miRNA:   3'- cuaUUUAgGGUauCaCCGGCGACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.