miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3773 3' -53.8 NC_001650.1 + 165742 0.66 0.978408
Target:  5'- gGCCCGGG-GCGgc--UCUUaggccuAGGGGGGc -3'
miRNA:   3'- -CGGGUCCaCGUacaaAGAG------UCCCUCC- -5'
3773 3' -53.8 NC_001650.1 + 102109 0.66 0.978408
Target:  5'- aGgCCGGGUGCGag--UCcCAGGGAcGGu -3'
miRNA:   3'- -CgGGUCCACGUacaaAGaGUCCCU-CC- -5'
3773 3' -53.8 NC_001650.1 + 39321 0.66 0.978408
Target:  5'- cUCCAGGgauggugGCucauuUGgaggUCUgGGGGAGGg -3'
miRNA:   3'- cGGGUCCa------CGu----ACaa--AGAgUCCCUCC- -5'
3773 3' -53.8 NC_001650.1 + 73440 0.66 0.976992
Target:  5'- cGCCCGGG-GCccGUacuguaacuucuugUCUCGGGGgcuucGGGg -3'
miRNA:   3'- -CGGGUCCaCGuaCAa-------------AGAGUCCC-----UCC- -5'
3773 3' -53.8 NC_001650.1 + 147349 0.66 0.976992
Target:  5'- gGCCCgAGGUGCggGUgcaggcacagccugUCUcCGGGGAu- -3'
miRNA:   3'- -CGGG-UCCACGuaCAa-------------AGA-GUCCCUcc -5'
3773 3' -53.8 NC_001650.1 + 27178 0.66 0.976011
Target:  5'- uGCCCaAGGUGUAcgaGUg---CAGGGAGu -3'
miRNA:   3'- -CGGG-UCCACGUa--CAaagaGUCCCUCc -5'
3773 3' -53.8 NC_001650.1 + 81201 0.66 0.976011
Target:  5'- aGCCCAcGUGgAUGUU-CUCcacggAGGuGAGGa -3'
miRNA:   3'- -CGGGUcCACgUACAAaGAG-----UCC-CUCC- -5'
3773 3' -53.8 NC_001650.1 + 19580 0.66 0.975509
Target:  5'- aGCCCGGGUGCcgcgcggCcCGGGGcGGc -3'
miRNA:   3'- -CGGGUCCACGuacaaa-GaGUCCCuCC- -5'
3773 3' -53.8 NC_001650.1 + 38381 0.66 0.970641
Target:  5'- -aCCGGGggcaggGCGUGgaccagCUCAGGGAc- -3'
miRNA:   3'- cgGGUCCa-----CGUACaaa---GAGUCCCUcc -5'
3773 3' -53.8 NC_001650.1 + 113812 0.66 0.967656
Target:  5'- cGUCCAGG-GCcg---UCUCcuGGGAGGa -3'
miRNA:   3'- -CGGGUCCaCGuacaaAGAGu-CCCUCC- -5'
3773 3' -53.8 NC_001650.1 + 30452 0.66 0.967656
Target:  5'- gGCCUuucuGGG-GCGg----CUCAGGGGGGu -3'
miRNA:   3'- -CGGG----UCCaCGUacaaaGAGUCCCUCC- -5'
3773 3' -53.8 NC_001650.1 + 136698 0.66 0.967656
Target:  5'- aCCCAGG-Gauag---CUCAGGGGGGu -3'
miRNA:   3'- cGGGUCCaCguacaaaGAGUCCCUCC- -5'
3773 3' -53.8 NC_001650.1 + 66902 0.66 0.967656
Target:  5'- gGCCgGGGaGCAUGgggC-CGGGGAGc -3'
miRNA:   3'- -CGGgUCCaCGUACaaaGaGUCCCUCc -5'
3773 3' -53.8 NC_001650.1 + 129340 0.67 0.961052
Target:  5'- gGCCCAGGaGCAgagGgagaUCAuGGAGGa -3'
miRNA:   3'- -CGGGUCCaCGUa--CaaagAGUcCCUCC- -5'
3773 3' -53.8 NC_001650.1 + 111147 0.67 0.961052
Target:  5'- aCCCcGG-GCcc---UCUCAGGGAGGg -3'
miRNA:   3'- cGGGuCCaCGuacaaAGAGUCCCUCC- -5'
3773 3' -53.8 NC_001650.1 + 4063 0.67 0.957423
Target:  5'- gGCCaguGGGaUGCAUGggugUCUgAGGuGGGGg -3'
miRNA:   3'- -CGGg--UCC-ACGUACaa--AGAgUCC-CUCC- -5'
3773 3' -53.8 NC_001650.1 + 29108 0.67 0.957423
Target:  5'- uGCCCAcGGUGCA-GUgcacCUCcAGGGAc- -3'
miRNA:   3'- -CGGGU-CCACGUaCAaa--GAG-UCCCUcc -5'
3773 3' -53.8 NC_001650.1 + 95009 0.67 0.957423
Target:  5'- gGCCCAGG-GCAUGUccCUgAgccGGGuGGc -3'
miRNA:   3'- -CGGGUCCaCGUACAaaGAgU---CCCuCC- -5'
3773 3' -53.8 NC_001650.1 + 170770 0.67 0.957423
Target:  5'- gGCCaguGGGaUGCAUGggugUCUgAGGuGGGGg -3'
miRNA:   3'- -CGGg--UCC-ACGUACaa--AGAgUCC-CUCC- -5'
3773 3' -53.8 NC_001650.1 + 75181 0.67 0.957423
Target:  5'- cGCuCCAGGcucagGCcgGgcuUUUUCAGGGGGa -3'
miRNA:   3'- -CG-GGUCCa----CGuaCa--AAGAGUCCCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.