miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3773 5' -61.4 NC_001650.1 + 51020 0.66 0.768151
Target:  5'- cGGCggCCCCCUCUCaGAUCAaggugGGCgUGAc -3'
miRNA:   3'- -CCG--GGGGGAGAGgCUGGUg----CUGgACU- -5'
3773 5' -61.4 NC_001650.1 + 75315 0.66 0.768151
Target:  5'- cGCCCCCCUg--CGGCCGCgGACgaGGc -3'
miRNA:   3'- cCGGGGGGAgagGCUGGUG-CUGgaCU- -5'
3773 5' -61.4 NC_001650.1 + 96657 0.66 0.768151
Target:  5'- cGGCCUCCUUUcCgGGCCugGGCUUu- -3'
miRNA:   3'- -CCGGGGGGAGaGgCUGGugCUGGAcu -5'
3773 5' -61.4 NC_001650.1 + 58182 0.66 0.762798
Target:  5'- cGCCCCCCUCUCgcucucccucuuccuCGaagGCCAUGuCCUc- -3'
miRNA:   3'- cCGGGGGGAGAG---------------GC---UGGUGCuGGAcu -5'
3773 5' -61.4 NC_001650.1 + 71005 0.66 0.759209
Target:  5'- cGCCCUCCagcgUCGAggACGACCUGAa -3'
miRNA:   3'- cCGGGGGGaga-GGCUggUGCUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 183565 0.66 0.759209
Target:  5'- aGGUCaCCCgUCUCCGGgCA-GACCUcGGg -3'
miRNA:   3'- -CCGG-GGGgAGAGGCUgGUgCUGGA-CU- -5'
3773 5' -61.4 NC_001650.1 + 1450 0.66 0.759209
Target:  5'- cGGCCCCCCggCUCCcauuGGCCGgGAgg-GAu -3'
miRNA:   3'- -CCGGGGGGa-GAGG----CUGGUgCUggaCU- -5'
3773 5' -61.4 NC_001650.1 + 121802 0.66 0.759209
Target:  5'- uGGUCCUUgaC-CCGAgCCugGGCCUGGg -3'
miRNA:   3'- -CCGGGGGgaGaGGCU-GGugCUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 168157 0.66 0.759209
Target:  5'- cGGCCCCCCggCUCCcauuGGCCGgGAgg-GAu -3'
miRNA:   3'- -CCGGGGGGa-GAGG----CUGGUgCUggaCU- -5'
3773 5' -61.4 NC_001650.1 + 16858 0.66 0.759209
Target:  5'- aGGUCaCCCgUCUCCGGgCA-GACCUcGGg -3'
miRNA:   3'- -CCGG-GGGgAGAGGCUgGUgCUGGA-CU- -5'
3773 5' -61.4 NC_001650.1 + 97172 0.66 0.750166
Target:  5'- uGGCCaacugCCagCUCUUCuGCCugGGCCUGGa -3'
miRNA:   3'- -CCGG-----GGg-GAGAGGcUGGugCUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 93380 0.66 0.741032
Target:  5'- uGGCCUgCCUCcUgGACUGCGAggaCCUGGu -3'
miRNA:   3'- -CCGGGgGGAGaGgCUGGUGCU---GGACU- -5'
3773 5' -61.4 NC_001650.1 + 65058 0.66 0.741032
Target:  5'- uGGCCCUCCUg-CgGGCCAUGACg--- -3'
miRNA:   3'- -CCGGGGGGAgaGgCUGGUGCUGgacu -5'
3773 5' -61.4 NC_001650.1 + 140729 0.66 0.741032
Target:  5'- uGGUCCagagCCCUCUCa-GCCGCGcUCUGAu -3'
miRNA:   3'- -CCGGG----GGGAGAGgcUGGUGCuGGACU- -5'
3773 5' -61.4 NC_001650.1 + 133390 0.66 0.73551
Target:  5'- cGCCgCCCUCgcgcgCCGggGCCGCggugcccgagaagaaGACCUGGg -3'
miRNA:   3'- cCGGgGGGAGa----GGC--UGGUG---------------CUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 76285 0.66 0.731813
Target:  5'- aGGCCgUgaucuuaaaggUCUUUCUGACCGCGGCCa-- -3'
miRNA:   3'- -CCGGgG-----------GGAGAGGCUGGUGCUGGacu -5'
3773 5' -61.4 NC_001650.1 + 41590 0.66 0.731813
Target:  5'- cGCagCCCCCUCcgCCGGCCuGCuGCUUGAc -3'
miRNA:   3'- cCG--GGGGGAGa-GGCUGG-UGcUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 109286 0.66 0.731813
Target:  5'- cGCCCCgCUCgucgccCUGGCCAaGAuCCUGAa -3'
miRNA:   3'- cCGGGGgGAGa-----GGCUGGUgCU-GGACU- -5'
3773 5' -61.4 NC_001650.1 + 157260 0.66 0.731813
Target:  5'- aGGCcgCCCCCUCggggCUGuagcCCAUGcGCCUGGg -3'
miRNA:   3'- -CCG--GGGGGAGa---GGCu---GGUGC-UGGACU- -5'
3773 5' -61.4 NC_001650.1 + 132732 0.66 0.722517
Target:  5'- aGUCCCCggCUCgGugCACGACCc-- -3'
miRNA:   3'- cCGGGGGgaGAGgCugGUGCUGGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.