miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3773 5' -61.4 NC_001650.1 + 1450 0.66 0.759209
Target:  5'- cGGCCCCCCggCUCCcauuGGCCGgGAgg-GAu -3'
miRNA:   3'- -CCGGGGGGa-GAGG----CUGGUgCUggaCU- -5'
3773 5' -61.4 NC_001650.1 + 2010 0.72 0.384733
Target:  5'- cGGCCCaCCCUCUCCccauuGGCCAUggaGGCCa-- -3'
miRNA:   3'- -CCGGG-GGGAGAGG-----CUGGUG---CUGGacu -5'
3773 5' -61.4 NC_001650.1 + 4414 0.67 0.675156
Target:  5'- cGUCCCCCaUUggCCGGCCuCGACCgcaGAg -3'
miRNA:   3'- cCGGGGGG-AGa-GGCUGGuGCUGGa--CU- -5'
3773 5' -61.4 NC_001650.1 + 11062 0.7 0.504026
Target:  5'- cGCCCCUCUCuuUCCcACCGCGGCUcucUGGg -3'
miRNA:   3'- cCGGGGGGAG--AGGcUGGUGCUGG---ACU- -5'
3773 5' -61.4 NC_001650.1 + 12724 0.72 0.400621
Target:  5'- aGGCCuaCCCCUCgagccCCGGCCugGAUUUGc -3'
miRNA:   3'- -CCGG--GGGGAGa----GGCUGGugCUGGACu -5'
3773 5' -61.4 NC_001650.1 + 14386 0.67 0.694247
Target:  5'- uGGCCCCCCU---UGACCACaugGACCc-- -3'
miRNA:   3'- -CCGGGGGGAgagGCUGGUG---CUGGacu -5'
3773 5' -61.4 NC_001650.1 + 16858 0.66 0.759209
Target:  5'- aGGUCaCCCgUCUCCGGgCA-GACCUcGGg -3'
miRNA:   3'- -CCGG-GGGgAGAGGCUgGUgCUGGA-CU- -5'
3773 5' -61.4 NC_001650.1 + 17452 0.69 0.597143
Target:  5'- gGGCCCCUCUCcUCGGCCGCccuuuguGGCCc-- -3'
miRNA:   3'- -CCGGGGGGAGaGGCUGGUG-------CUGGacu -5'
3773 5' -61.4 NC_001650.1 + 21943 0.69 0.598103
Target:  5'- cGGCCUCCUUCUgCgGACCcccgGCuACCUGGg -3'
miRNA:   3'- -CCGGGGGGAGA-GgCUGG----UGcUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 23218 0.71 0.480558
Target:  5'- gGGCCCCCCUCggaCGcCCGgGAgguccugcuggggauCCUGAg -3'
miRNA:   3'- -CCGGGGGGAGag-GCuGGUgCU---------------GGACU- -5'
3773 5' -61.4 NC_001650.1 + 23403 0.77 0.212747
Target:  5'- gGGCCCCCCUUcCuCGAuggagcCCugGACCUGGg -3'
miRNA:   3'- -CCGGGGGGAGaG-GCU------GGugCUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 24989 0.68 0.607724
Target:  5'- gGGgCCCCCUCcCCGgaguGCCugGACaggCUGGu -3'
miRNA:   3'- -CCgGGGGGAGaGGC----UGGugCUG---GACU- -5'
3773 5' -61.4 NC_001650.1 + 26293 0.7 0.513184
Target:  5'- gGGCCCCgggUUCUCCGuCCGCGguguGCUUGAc -3'
miRNA:   3'- -CCGGGGg--GAGAGGCuGGUGC----UGGACU- -5'
3773 5' -61.4 NC_001650.1 + 26342 0.69 0.566546
Target:  5'- cGCCCCCCUCUCCcucaacacccugguGugCACcuccacCCUGGc -3'
miRNA:   3'- cCGGGGGGAGAGG--------------CugGUGcu----GGACU- -5'
3773 5' -61.4 NC_001650.1 + 26816 0.68 0.627007
Target:  5'- cGCgCCCCUUCgaguuggCCGACCugGggcACCUGc -3'
miRNA:   3'- cCG-GGGGGAGa------GGCUGGugC---UGGACu -5'
3773 5' -61.4 NC_001650.1 + 41433 0.67 0.703726
Target:  5'- -aCCCCCgUCUgggcCCGGCCGcCGcCCUGGg -3'
miRNA:   3'- ccGGGGGgAGA----GGCUGGU-GCuGGACU- -5'
3773 5' -61.4 NC_001650.1 + 41590 0.66 0.731813
Target:  5'- cGCagCCCCCUCcgCCGGCCuGCuGCUUGAc -3'
miRNA:   3'- cCG--GGGGGAGa-GGCUGG-UGcUGGACU- -5'
3773 5' -61.4 NC_001650.1 + 41828 0.68 0.61736
Target:  5'- -aCCCCCCUCUCCcACCGCc-CCgggGAa -3'
miRNA:   3'- ccGGGGGGAGAGGcUGGUGcuGGa--CU- -5'
3773 5' -61.4 NC_001650.1 + 45963 0.67 0.694247
Target:  5'- uGGCCaguuCCCCUCUCa-GCCGCGcGCCg-- -3'
miRNA:   3'- -CCGG----GGGGAGAGgcUGGUGC-UGGacu -5'
3773 5' -61.4 NC_001650.1 + 47836 0.68 0.65594
Target:  5'- cGCCgCCCUCUUUggGACCAUG-CUUGAg -3'
miRNA:   3'- cCGGgGGGAGAGG--CUGGUGCuGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.