miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3776 3' -57.9 NC_001650.1 + 157020 0.66 0.862193
Target:  5'- -cCUGUG-GCCgGucgcUGGAaacucCCUGCACUCg -3'
miRNA:   3'- gaGACGCuCGGgU----ACCU-----GGACGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 146884 0.66 0.858418
Target:  5'- aCUCUGCuccccucucauuGGCCCcgGGAUCUGUccaucaaauucccuGCUCu -3'
miRNA:   3'- -GAGACGc-----------UCGGGuaCCUGGACG--------------UGAG- -5'
3776 3' -57.9 NC_001650.1 + 51293 0.66 0.854593
Target:  5'- -gCUGCGAgugGCCCAaGGGCggGCACg- -3'
miRNA:   3'- gaGACGCU---CGGGUaCCUGgaCGUGag -5'
3776 3' -57.9 NC_001650.1 + 106216 0.66 0.838811
Target:  5'- aCUCUGCGGGCaCCAggauaugccaggUGGucuuCgUGCACa- -3'
miRNA:   3'- -GAGACGCUCG-GGU------------ACCu---GgACGUGag -5'
3776 3' -57.9 NC_001650.1 + 24773 0.66 0.838811
Target:  5'- ---cGUGGGCuCCAUGG-CCUGCAggaucCUCu -3'
miRNA:   3'- gagaCGCUCG-GGUACCuGGACGU-----GAG- -5'
3776 3' -57.9 NC_001650.1 + 106380 0.66 0.830642
Target:  5'- -cCUGCGAGUCCA-GGuuGCCcGC-CUCg -3'
miRNA:   3'- gaGACGCUCGGGUaCC--UGGaCGuGAG- -5'
3776 3' -57.9 NC_001650.1 + 111852 0.67 0.825656
Target:  5'- uCUCUGCGucccuaaagacccccAcGUCCAgcUGGaACCUGUGCUCg -3'
miRNA:   3'- -GAGACGC---------------U-CGGGU--ACC-UGGACGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 104499 0.67 0.822298
Target:  5'- gUCUGCccaGAGCCCuacGuGCCcGCGCUCg -3'
miRNA:   3'- gAGACG---CUCGGGua-CcUGGaCGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 162547 0.67 0.822298
Target:  5'- -aCUGC-AGCCCAggccccGGGCCUGguCUa -3'
miRNA:   3'- gaGACGcUCGGGUa-----CCUGGACguGAg -5'
3776 3' -57.9 NC_001650.1 + 57379 0.67 0.813785
Target:  5'- -aCUGUGA-CCUGUgGGGCCUGCgGCUCc -3'
miRNA:   3'- gaGACGCUcGGGUA-CCUGGACG-UGAG- -5'
3776 3' -57.9 NC_001650.1 + 82587 0.67 0.812924
Target:  5'- ---cGCGAGCUCGUuccucgcGGGCCUGUGCa- -3'
miRNA:   3'- gagaCGCUCGGGUA-------CCUGGACGUGag -5'
3776 3' -57.9 NC_001650.1 + 95762 0.67 0.805111
Target:  5'- ---aGCGAGCUgGU-GACCUGC-CUCa -3'
miRNA:   3'- gagaCGCUCGGgUAcCUGGACGuGAG- -5'
3776 3' -57.9 NC_001650.1 + 113343 0.67 0.805111
Target:  5'- gCUCgcguagcugGCGGGCCCcacgAUGGAgUUGcCGCUCu -3'
miRNA:   3'- -GAGa--------CGCUCGGG----UACCUgGAC-GUGAG- -5'
3776 3' -57.9 NC_001650.1 + 23337 0.67 0.787314
Target:  5'- --gUGCGgcguggGGCCCcUGGACCUGCccguggccgacuACUCu -3'
miRNA:   3'- gagACGC------UCGGGuACCUGGACG------------UGAG- -5'
3776 3' -57.9 NC_001650.1 + 110525 0.67 0.778207
Target:  5'- -gCUGCGAgGCCCAgggguugaccgUGGcCCUGaACUCg -3'
miRNA:   3'- gaGACGCU-CGGGU-----------ACCuGGACgUGAG- -5'
3776 3' -57.9 NC_001650.1 + 139010 0.67 0.778207
Target:  5'- ---gGUGAGCCCGUGGaACC-GCGCc- -3'
miRNA:   3'- gagaCGCUCGGGUACC-UGGaCGUGag -5'
3776 3' -57.9 NC_001650.1 + 78175 0.68 0.768973
Target:  5'- ---cGCGAGUCUAUGGugACCgugGUGCUCg -3'
miRNA:   3'- gagaCGCUCGGGUACC--UGGa--CGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 67875 0.68 0.75962
Target:  5'- uUCuUGU-AGCCCA-GGACCgcGCACUCg -3'
miRNA:   3'- gAG-ACGcUCGGGUaCCUGGa-CGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 47979 0.68 0.75962
Target:  5'- uCUCaGgGAGUCCGUGGAgguCCUGCAg-- -3'
miRNA:   3'- -GAGaCgCUCGGGUACCU---GGACGUgag -5'
3776 3' -57.9 NC_001650.1 + 46950 0.68 0.750157
Target:  5'- aUCUGCcAGCCCgggacggcgGUGGACCUGUg--- -3'
miRNA:   3'- gAGACGcUCGGG---------UACCUGGACGugag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.