miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3776 3' -57.9 NC_001650.1 + 49998 0.68 0.730937
Target:  5'- -cCUGCGAGCCCGUGGA---GCAa-- -3'
miRNA:   3'- gaGACGCUCGGGUACCUggaCGUgag -5'
3776 3' -57.9 NC_001650.1 + 71180 0.68 0.725102
Target:  5'- -gCUGC-AGuacuccuacuacuucCCCGUGGGCCUGCACa- -3'
miRNA:   3'- gaGACGcUC---------------GGGUACCUGGACGUGag -5'
3776 3' -57.9 NC_001650.1 + 108011 0.68 0.721197
Target:  5'- -gCUGCGu-CCCAgGGAgacgccCCUGCACUCg -3'
miRNA:   3'- gaGACGCucGGGUaCCU------GGACGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 37706 0.69 0.711383
Target:  5'- gCUCaaccGgGuGCCCGUGGGCCaGCugUCc -3'
miRNA:   3'- -GAGa---CgCuCGGGUACCUGGaCGugAG- -5'
3776 3' -57.9 NC_001650.1 + 48978 0.69 0.711383
Target:  5'- aCUgaGCuGGGCCC--GGGCCUGUACUg -3'
miRNA:   3'- -GAgaCG-CUCGGGuaCCUGGACGUGAg -5'
3776 3' -57.9 NC_001650.1 + 66418 0.69 0.691567
Target:  5'- gUgUGCGGGCCCGUGGAgCCcGCcgccaccgGCUUg -3'
miRNA:   3'- gAgACGCUCGGGUACCU-GGaCG--------UGAG- -5'
3776 3' -57.9 NC_001650.1 + 91802 0.69 0.681582
Target:  5'- -cCUGCuucuuGAGCCC-UGGGCCgUGgACUCg -3'
miRNA:   3'- gaGACG-----CUCGGGuACCUGG-ACgUGAG- -5'
3776 3' -57.9 NC_001650.1 + 94820 0.7 0.64133
Target:  5'- ---gGcCGAGCUCAgcagGGACCUGCGCg- -3'
miRNA:   3'- gagaC-GCUCGGGUa---CCUGGACGUGag -5'
3776 3' -57.9 NC_001650.1 + 11686 0.7 0.63123
Target:  5'- --aUGgGGGCCUAggGGGCCUGCccACUCu -3'
miRNA:   3'- gagACgCUCGGGUa-CCUGGACG--UGAG- -5'
3776 3' -57.9 NC_001650.1 + 178393 0.7 0.63123
Target:  5'- --aUGgGGGCCUAggGGGCCUGCccACUCu -3'
miRNA:   3'- gagACgCUCGGGUa-CCUGGACG--UGAG- -5'
3776 3' -57.9 NC_001650.1 + 138209 0.7 0.611038
Target:  5'- aUCaGCGAuccugGCCCGugauUGGcCCUGCGCUCu -3'
miRNA:   3'- gAGaCGCU-----CGGGU----ACCuGGACGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 156280 0.7 0.600961
Target:  5'- ---cGCGGGCCaccaGGGCCUGCACg- -3'
miRNA:   3'- gagaCGCUCGGgua-CCUGGACGUGag -5'
3776 3' -57.9 NC_001650.1 + 132955 0.71 0.590907
Target:  5'- ---cGCGAGCCCuccgGUGGuCC-GCGCUCg -3'
miRNA:   3'- gagaCGCUCGGG----UACCuGGaCGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 113176 0.71 0.580883
Target:  5'- uUCUGCuGGCCCA-GGcCCgccGCGCUCg -3'
miRNA:   3'- gAGACGcUCGGGUaCCuGGa--CGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 155067 0.71 0.570894
Target:  5'- ---aGCGuGaCUAUGGGCCUGCACUUg -3'
miRNA:   3'- gagaCGCuCgGGUACCUGGACGUGAG- -5'
3776 3' -57.9 NC_001650.1 + 73183 0.72 0.531418
Target:  5'- -gUUGCGA-CCCuUGGACCUGgACUCc -3'
miRNA:   3'- gaGACGCUcGGGuACCUGGACgUGAG- -5'
3776 3' -57.9 NC_001650.1 + 142417 0.73 0.487316
Target:  5'- uCUCUaCGGGCCCgagggcaucauggccGUGGACCUGCAgCUg -3'
miRNA:   3'- -GAGAcGCUCGGG---------------UACCUGGACGU-GAg -5'
3776 3' -57.9 NC_001650.1 + 105505 0.73 0.483561
Target:  5'- cCUCaGCGAGCCCGUgaaccGGGUCUGCACa- -3'
miRNA:   3'- -GAGaCGCUCGGGUA-----CCUGGACGUGag -5'
3776 3' -57.9 NC_001650.1 + 47759 0.74 0.386471
Target:  5'- --aUGCGGGCCCugugcgaGGGCCUGCGCg- -3'
miRNA:   3'- gagACGCUCGGGua-----CCUGGACGUGag -5'
3776 3' -57.9 NC_001650.1 + 112787 0.81 0.162111
Target:  5'- gCUCguacuCGAGCCCGUGGGCCuccaUGCGCUCg -3'
miRNA:   3'- -GAGac---GCUCGGGUACCUGG----ACGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.