miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3779 5' -41.4 NC_001650.1 + 83754 0.66 1
Target:  5'- cGUCCUgag--GGUCa--GGUACCCCg -3'
miRNA:   3'- uUAGGGaaaaaCUAGaaaUUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 17304 0.69 1
Target:  5'- --cCCaCUUUUUaGGUCUUaggGGUACCCUg -3'
miRNA:   3'- uuaGG-GAAAAA-CUAGAAa--UUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 57670 0.69 1
Target:  5'- --aCCCUUcagagaGAUCUgUAGUGCCCg -3'
miRNA:   3'- uuaGGGAAaaa---CUAGAaAUUAUGGGg -5'
3779 5' -41.4 NC_001650.1 + 82461 0.68 1
Target:  5'- gGGUCCC----UGAUCUgg---ACCCCc -3'
miRNA:   3'- -UUAGGGaaaaACUAGAaauuaUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 95789 0.67 1
Target:  5'- cGUUCCUgag-GGUCUcgggUAGUACUCCc -3'
miRNA:   3'- uUAGGGAaaaaCUAGAa---AUUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 162567 0.66 1
Target:  5'- cGUCCCcgc-UGGUCaggUAggACCCCa -3'
miRNA:   3'- uUAGGGaaaaACUAGaa-AUuaUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 82666 0.66 1
Target:  5'- gGGUCCuCUUUUUGAUCUUU--UGCa-- -3'
miRNA:   3'- -UUAGG-GAAAAACUAGAAAuuAUGggg -5'
3779 5' -41.4 NC_001650.1 + 74590 0.66 1
Target:  5'- -uUCCCg---UGGU----GAUGCCCCa -3'
miRNA:   3'- uuAGGGaaaaACUAgaaaUUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 78950 0.67 1
Target:  5'- uGUCCCUccuggGggCgcaGAUGCCCCg -3'
miRNA:   3'- uUAGGGAaaaa-CuaGaaaUUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 145830 0.67 1
Target:  5'- aGGUCCCUgagcUGGUCcacgcccUGCCCCc -3'
miRNA:   3'- -UUAGGGAaaa-ACUAGaaauu--AUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 155392 0.68 1
Target:  5'- -uUCCCgaagcucUGGUCggUGAgGCCCCu -3'
miRNA:   3'- uuAGGGaaaa---ACUAGaaAUUaUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 120203 0.68 1
Target:  5'- cGUCaCCUccUUGGUCUUc-AUACCCUa -3'
miRNA:   3'- uUAG-GGAaaAACUAGAAauUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 62928 0.7 1
Target:  5'- cGUUCCUgg--GGUCUggcacGUGCCCCu -3'
miRNA:   3'- uUAGGGAaaaaCUAGAaau--UAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 184011 0.69 1
Target:  5'- --cCCaCUUUUUaGGUCUUaggGGUACCCUg -3'
miRNA:   3'- uuaGG-GAAAAA-CUAGAAa--UUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 17494 0.7 0.999999
Target:  5'- -cUCCCcccggGGUCUUU--UGCCCCu -3'
miRNA:   3'- uuAGGGaaaaaCUAGAAAuuAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 184201 0.7 0.999999
Target:  5'- -cUCCCcccggGGUCUUU--UGCCCCu -3'
miRNA:   3'- uuAGGGaaaaaCUAGAAAuuAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 179534 0.72 0.999974
Target:  5'- uGGUCCUagag-GGUCUUUAAgACCCCc -3'
miRNA:   3'- -UUAGGGaaaaaCUAGAAAUUaUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 12827 0.72 0.999974
Target:  5'- uGGUCCUagag-GGUCUUUAAgACCCCc -3'
miRNA:   3'- -UUAGGGaaaaaCUAGAAAUUaUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 106599 0.74 0.999883
Target:  5'- -cUCUCUUUUUGGUUcc--GUGCCCCu -3'
miRNA:   3'- uuAGGGAAAAACUAGaaauUAUGGGG- -5'
3779 5' -41.4 NC_001650.1 + 141318 0.77 0.998074
Target:  5'- --cCCCUUUggacggUGGUCUUUAGacUAUCCCg -3'
miRNA:   3'- uuaGGGAAAa-----ACUAGAAAUU--AUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.