miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3780 3' -52.8 NC_001650.1 + 5041 0.66 0.987628
Target:  5'- aGGCg--GAcGGGGGUCCc-UCCGGGGg -3'
miRNA:   3'- -CUGauaCUuCCUCUAGGacAGGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 171748 0.66 0.987628
Target:  5'- aGGCg--GAcGGGGGUCCc-UCCGGGGg -3'
miRNA:   3'- -CUGauaCUuCCUCUAGGacAGGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 102290 0.66 0.984269
Target:  5'- aGACgc-GAGGGcgaacauGAUCCUGagCGGGAa -3'
miRNA:   3'- -CUGauaCUUCCu------CUAGGACagGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 61084 0.66 0.984269
Target:  5'- uGACgcUGAAGGuGggCCcGUCgGGGGa -3'
miRNA:   3'- -CUGauACUUCCuCuaGGaCAGgCCCU- -5'
3780 3' -52.8 NC_001650.1 + 38028 0.66 0.98026
Target:  5'- cACcGUcAGGGAGAUCCUGgcgaaCGGGGu -3'
miRNA:   3'- cUGaUAcUUCCUCUAGGACag---GCCCU- -5'
3780 3' -52.8 NC_001650.1 + 95750 0.67 0.963694
Target:  5'- -----cGGAGGAGAacUCCUGccugcUCUGGGAg -3'
miRNA:   3'- cugauaCUUCCUCU--AGGAC-----AGGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 102701 0.68 0.958737
Target:  5'- aGAUacUGGAGGAGAUCCUGagcaaccuguaccCCGaGGAg -3'
miRNA:   3'- -CUGauACUUCCUCUAGGACa------------GGC-CCU- -5'
3780 3' -52.8 NC_001650.1 + 23225 0.71 0.87202
Target:  5'- -cCUcgGAcgcccGGGAGGUCCUG-CUGGGGa -3'
miRNA:   3'- cuGAuaCU-----UCCUCUAGGACaGGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 9134 0.72 0.815219
Target:  5'- uGGCUAUGAGGGgcagGGGUCCUgaGUgUGGGGg -3'
miRNA:   3'- -CUGAUACUUCC----UCUAGGA--CAgGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 175841 0.72 0.815219
Target:  5'- uGGCUAUGAGGGgcagGGGUCCUgaGUgUGGGGg -3'
miRNA:   3'- -CUGAUACUUCC----UCUAGGA--CAgGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 155482 0.73 0.788174
Target:  5'- -----gGggGGAGAUCUUGgcccCCGGGAa -3'
miRNA:   3'- cugauaCuuCCUCUAGGACa---GGCCCU- -5'
3780 3' -52.8 NC_001650.1 + 41089 1.09 0.007195
Target:  5'- uGACUAUGAAGGAGAUCCUGUCCGGGAu -3'
miRNA:   3'- -CUGAUACUUCCUCUAGGACAGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.