miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3781 3' -64.6 NC_001650.1 + 27270 0.66 0.547102
Target:  5'- gAGCUGGCCGuGAGCUa-CGGCCUg- -3'
miRNA:   3'- gUCGACUGGUcCUCGGggGCCGGGaa -5'
3781 3' -64.6 NC_001650.1 + 121346 0.66 0.547102
Target:  5'- cCGGgUGcuCC-GGAGCCCCCuGGCCuCUg -3'
miRNA:   3'- -GUCgACu-GGuCCUCGGGGG-CCGG-GAa -5'
3781 3' -64.6 NC_001650.1 + 77953 0.66 0.547102
Target:  5'- gCGGCUGcgaggcACCgAGGGGCCgUCGcGCCCa- -3'
miRNA:   3'- -GUCGAC------UGG-UCCUCGGgGGC-CGGGaa -5'
3781 3' -64.6 NC_001650.1 + 43977 0.66 0.547102
Target:  5'- gGGCUGAgcCCAGGGuuacauGCUCCCGGCg--- -3'
miRNA:   3'- gUCGACU--GGUCCU------CGGGGGCCGggaa -5'
3781 3' -64.6 NC_001650.1 + 116996 0.66 0.546153
Target:  5'- -cGCUGGCCAGGcucauccuguccgGGCaCCCGuacGCCCUg -3'
miRNA:   3'- guCGACUGGUCC-------------UCGgGGGC---CGGGAa -5'
3781 3' -64.6 NC_001650.1 + 145685 0.66 0.537641
Target:  5'- aCAGCUGGCaGGaGAGCUCCCcGCCg-- -3'
miRNA:   3'- -GUCGACUGgUC-CUCGGGGGcCGGgaa -5'
3781 3' -64.6 NC_001650.1 + 88480 0.66 0.537641
Target:  5'- -cGCUGGCgCGGGGaguuuccccGCCCCgGGCCa-- -3'
miRNA:   3'- guCGACUG-GUCCU---------CGGGGgCCGGgaa -5'
3781 3' -64.6 NC_001650.1 + 25057 0.66 0.537641
Target:  5'- gAGCgacgUGGCCAGcGGGCCCgCCauGGCCUa- -3'
miRNA:   3'- gUCG----ACUGGUC-CUCGGG-GG--CCGGGaa -5'
3781 3' -64.6 NC_001650.1 + 131348 0.66 0.537641
Target:  5'- gGGCccGGCCGGGGGCCCuguacgggacuCUGGCCa-- -3'
miRNA:   3'- gUCGa-CUGGUCCUCGGG-----------GGCCGGgaa -5'
3781 3' -64.6 NC_001650.1 + 151927 0.66 0.528238
Target:  5'- gGGUUGGCCGGGuucUCCUCGGCCa-- -3'
miRNA:   3'- gUCGACUGGUCCuc-GGGGGCCGGgaa -5'
3781 3' -64.6 NC_001650.1 + 59737 0.66 0.518896
Target:  5'- gGGCgu-CgAGGGGCCCgUGGCCCc- -3'
miRNA:   3'- gUCGacuGgUCCUCGGGgGCCGGGaa -5'
3781 3' -64.6 NC_001650.1 + 42982 0.66 0.518896
Target:  5'- gGGCgaACCGGGGGaCCCCgGGCUCc- -3'
miRNA:   3'- gUCGacUGGUCCUC-GGGGgCCGGGaa -5'
3781 3' -64.6 NC_001650.1 + 131912 0.66 0.517965
Target:  5'- gGGCgGGCCAGGgcgGGCUUCCugcugugGGCCCUg -3'
miRNA:   3'- gUCGaCUGGUCC---UCGGGGG-------CCGGGAa -5'
3781 3' -64.6 NC_001650.1 + 94690 0.66 0.50962
Target:  5'- gGGCUcugccuccgaGACCAGGAaCaCCCGGCUCUUg -3'
miRNA:   3'- gUCGA----------CUGGUCCUcGgGGGCCGGGAA- -5'
3781 3' -64.6 NC_001650.1 + 141234 0.66 0.50962
Target:  5'- uCGGgaGcCCGGGGucccccgguucGCCCUCGGCCCc- -3'
miRNA:   3'- -GUCgaCuGGUCCU-----------CGGGGGCCGGGaa -5'
3781 3' -64.6 NC_001650.1 + 120200 0.66 0.50962
Target:  5'- gGGCgucACCuccuuGGucuucauacccuAGCCCCCGGCCCa- -3'
miRNA:   3'- gUCGac-UGGu----CC------------UCGGGGGCCGGGaa -5'
3781 3' -64.6 NC_001650.1 + 36434 0.66 0.50962
Target:  5'- aGGCUcuCCAGGAGCguguuCCCCGgucGCCCUc -3'
miRNA:   3'- gUCGAcuGGUCCUCG-----GGGGC---CGGGAa -5'
3781 3' -64.6 NC_001650.1 + 164136 0.66 0.500414
Target:  5'- -cGuCUGGCCGcGGGGCCCCgGGUCa-- -3'
miRNA:   3'- guC-GACUGGU-CCUCGGGGgCCGGgaa -5'
3781 3' -64.6 NC_001650.1 + 131164 0.66 0.500414
Target:  5'- aCAGguccCUGGCUAGGcaAGCgaccaaguuCCCCGGCCCg- -3'
miRNA:   3'- -GUC----GACUGGUCC--UCG---------GGGGCCGGGaa -5'
3781 3' -64.6 NC_001650.1 + 123467 0.66 0.500414
Target:  5'- cCAGCaccuACgGGGAGCUCCUGGCCg-- -3'
miRNA:   3'- -GUCGac--UGgUCCUCGGGGGCCGGgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.