miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3781 5' -59.2 NC_001650.1 + 16827 0.66 0.833765
Target:  5'- -uGGGcggCCcGAGGUGGGguuUGGGGGAg -3'
miRNA:   3'- agUCCua-GGaCUCCGCCC---ACCUCCUg -5'
3781 5' -59.2 NC_001650.1 + 183534 0.66 0.833765
Target:  5'- -uGGGcggCCcGAGGUGGGguuUGGGGGAg -3'
miRNA:   3'- agUCCua-GGaCUCCGCCC---ACCUCCUg -5'
3781 5' -59.2 NC_001650.1 + 79100 0.66 0.833765
Target:  5'- cCGGGcgcggCCgcucgGcGGGCGGGaGGAGGGCc -3'
miRNA:   3'- aGUCCua---GGa----C-UCCGCCCaCCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 131369 0.66 0.833765
Target:  5'- aCGGGAcUCUggccaaGAGGCuggGGGUGGAgcugcgGGACa -3'
miRNA:   3'- aGUCCU-AGGa-----CUCCG---CCCACCU------CCUG- -5'
3781 5' -59.2 NC_001650.1 + 135934 0.66 0.833765
Target:  5'- -uGGGcuccagCCUGAGGUGGGgGGcAGGcACg -3'
miRNA:   3'- agUCCua----GGACUCCGCCCaCC-UCC-UG- -5'
3781 5' -59.2 NC_001650.1 + 108863 0.66 0.833765
Target:  5'- cCAGG-UCaccGGGUGGGagggcaUGGAGGACg -3'
miRNA:   3'- aGUCCuAGgacUCCGCCC------ACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 82344 0.66 0.825632
Target:  5'- cUCcuGGUCCUGgcagaGGGCgcucaGGGUGGAcaaGGACg -3'
miRNA:   3'- -AGucCUAGGAC-----UCCG-----CCCACCU---CCUG- -5'
3781 5' -59.2 NC_001650.1 + 38306 0.66 0.825632
Target:  5'- cCGGGGaCCUGGGGCccgucuacGGGUuccaguGGAGGcACu -3'
miRNA:   3'- aGUCCUaGGACUCCG--------CCCA------CCUCC-UG- -5'
3781 5' -59.2 NC_001650.1 + 72897 0.66 0.825632
Target:  5'- gCAGGGccUCCaGGGGaaaGGGUGGGcaaggcugcggcGGGCa -3'
miRNA:   3'- aGUCCU--AGGaCUCCg--CCCACCU------------CCUG- -5'
3781 5' -59.2 NC_001650.1 + 21750 0.66 0.823985
Target:  5'- aUCAGGGggcagcaacagCUGcGGCGcccccuGGUGGGGGACg -3'
miRNA:   3'- -AGUCCUag---------GACuCCGC------CCACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 129211 0.66 0.808876
Target:  5'- -gAGGAUCaggugGAGGgGGGUcGAGGGg -3'
miRNA:   3'- agUCCUAGga---CUCCgCCCAcCUCCUg -5'
3781 5' -59.2 NC_001650.1 + 98455 0.66 0.808876
Target:  5'- -gAGGAgggUgUGAGGgGGGcGGAGGGu -3'
miRNA:   3'- agUCCUa--GgACUCCgCCCaCCUCCUg -5'
3781 5' -59.2 NC_001650.1 + 25697 0.66 0.808876
Target:  5'- gCAGGAgCCUGcuGaGGGUGGAgcuGGGCa -3'
miRNA:   3'- aGUCCUaGGACucCgCCCACCU---CCUG- -5'
3781 5' -59.2 NC_001650.1 + 176533 0.66 0.800269
Target:  5'- cUCGGGuugCCUGgcagacuaAGG-GGGUGG-GGACu -3'
miRNA:   3'- -AGUCCua-GGAC--------UCCgCCCACCuCCUG- -5'
3781 5' -59.2 NC_001650.1 + 174314 0.66 0.800269
Target:  5'- aCGGGG---UGAGGUGGGUGGcccgccauuGGGCg -3'
miRNA:   3'- aGUCCUaggACUCCGCCCACCu--------CCUG- -5'
3781 5' -59.2 NC_001650.1 + 9826 0.66 0.800269
Target:  5'- cUCGGGuugCCUGgcagacuaAGG-GGGUGG-GGACu -3'
miRNA:   3'- -AGUCCua-GGAC--------UCCgCCCACCuCCUG- -5'
3781 5' -59.2 NC_001650.1 + 7607 0.66 0.800269
Target:  5'- aCGGGG---UGAGGUGGGUGGcccgccauuGGGCg -3'
miRNA:   3'- aGUCCUaggACUCCGCCCACCu--------CCUG- -5'
3781 5' -59.2 NC_001650.1 + 122687 0.66 0.800269
Target:  5'- -uGGGcugCCUGAGGCGGuacagGGAGGu- -3'
miRNA:   3'- agUCCua-GGACUCCGCCca---CCUCCug -5'
3781 5' -59.2 NC_001650.1 + 47610 0.66 0.7994
Target:  5'- aUCAGGAugaggcgUCUguggcgGGGGCGGuGUGGuuuccuguuGGACa -3'
miRNA:   3'- -AGUCCU-------AGGa-----CUCCGCC-CACCu--------CCUG- -5'
3781 5' -59.2 NC_001650.1 + 147749 0.66 0.791518
Target:  5'- -gGGGGUgCCUGGuuuuGGgGGacccGUGGAGGGCg -3'
miRNA:   3'- agUCCUA-GGACU----CCgCC----CACCUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.