miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3781 5' -59.2 NC_001650.1 + 38758 1.1 0.001526
Target:  5'- cUCAGGAUCCUGAGGCGGGUGGAGGACa -3'
miRNA:   3'- -AGUCCUAGGACUCCGCCCACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 103355 0.78 0.216252
Target:  5'- cCuGGAUCCUcgcGGGGCGaGUGGAGGGCg -3'
miRNA:   3'- aGuCCUAGGA---CUCCGCcCACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 89046 0.78 0.232188
Target:  5'- uUCAGGGUCCucuucgagcccaUGAGGCGGGUGaccgcGGACu -3'
miRNA:   3'- -AGUCCUAGG------------ACUCCGCCCACcu---CCUG- -5'
3781 5' -59.2 NC_001650.1 + 126442 0.77 0.249103
Target:  5'- cUCAGGAUCCUaucggccguccGAGcGCGcGcGUGGGGGACg -3'
miRNA:   3'- -AGUCCUAGGA-----------CUC-CGC-C-CACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 159757 0.76 0.299181
Target:  5'- uUCAGGAUCCUGaAGG-GGGUGuaggcGAGGAa -3'
miRNA:   3'- -AGUCCUAGGAC-UCCgCCCAC-----CUCCUg -5'
3781 5' -59.2 NC_001650.1 + 62593 0.76 0.305961
Target:  5'- gCAGGAagaUCCUGAGGUaGGaGUGGAcGGGCc -3'
miRNA:   3'- aGUCCU---AGGACUCCG-CC-CACCU-CCUG- -5'
3781 5' -59.2 NC_001650.1 + 35256 0.75 0.334256
Target:  5'- gCAGGAgCCUgugGAGcGCGGGUGGgcGGGGCg -3'
miRNA:   3'- aGUCCUaGGA---CUC-CGCCCACC--UCCUG- -5'
3781 5' -59.2 NC_001650.1 + 38297 0.74 0.356704
Target:  5'- gCGGGGUCCccgUGGccaaacGGCGGuGUGGGGGGCu -3'
miRNA:   3'- aGUCCUAGG---ACU------CCGCC-CACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 47493 0.74 0.356704
Target:  5'- cCGGGGUCuCUGAcacGGUGGGgguuUGGGGGACc -3'
miRNA:   3'- aGUCCUAG-GACU---CCGCCC----ACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 30710 0.74 0.380191
Target:  5'- gCGGGAgagCgaGAGGCGGGgccGcGAGGACg -3'
miRNA:   3'- aGUCCUa--GgaCUCCGCCCa--C-CUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 88352 0.73 0.421566
Target:  5'- gCAGGGUCCUGAcgGGCcugcgcgucaaGGG-GGAGGAg -3'
miRNA:   3'- aGUCCUAGGACU--CCG-----------CCCaCCUCCUg -5'
3781 5' -59.2 NC_001650.1 + 88198 0.73 0.430161
Target:  5'- aCAGcGAgUCCUccGAGGaCGGGggGGAGGACg -3'
miRNA:   3'- aGUC-CU-AGGA--CUCC-GCCCa-CCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 92758 0.73 0.438859
Target:  5'- cCGGGuUCCUGAGGCucgaGUGGAGGGu -3'
miRNA:   3'- aGUCCuAGGACUCCGcc--CACCUCCUg -5'
3781 5' -59.2 NC_001650.1 + 28430 0.72 0.447656
Target:  5'- aCAGG-UCCcccgGGcGGCGGGUGG-GGGCg -3'
miRNA:   3'- aGUCCuAGGa---CU-CCGCCCACCuCCUG- -5'
3781 5' -59.2 NC_001650.1 + 83618 0.72 0.453871
Target:  5'- --cGGAcaacguccguuacuUUCUGGGGCGGGUGaGGGACg -3'
miRNA:   3'- aguCCU--------------AGGACUCCGCCCACcUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 52993 0.72 0.483784
Target:  5'- cCAGGGUCUcGGGGacCGGGUccacGGAGGGCc -3'
miRNA:   3'- aGUCCUAGGaCUCC--GCCCA----CCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 145474 0.72 0.483784
Target:  5'- cUCAGGAUCCUGAgccugGGaaaGGGccGGGGGCu -3'
miRNA:   3'- -AGUCCUAGGACU-----CCg--CCCacCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 9148 0.71 0.502367
Target:  5'- -aGGGGUCCUGAGuGUGGG-GGGuGGCa -3'
miRNA:   3'- agUCCUAGGACUC-CGCCCaCCUcCUG- -5'
3781 5' -59.2 NC_001650.1 + 89681 0.71 0.502367
Target:  5'- aCAGGGaggCCgagGAGGCGGa-GGGGGGCg -3'
miRNA:   3'- aGUCCUa--GGa--CUCCGCCcaCCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 175855 0.71 0.502367
Target:  5'- -aGGGGUCCUGAGuGUGGG-GGGuGGCa -3'
miRNA:   3'- agUCCUAGGACUC-CGCCCaCCUcCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.