miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3781 5' -59.2 NC_001650.1 + 147749 0.66 0.791518
Target:  5'- -gGGGGUgCCUGGuuuuGGgGGacccGUGGAGGGCg -3'
miRNA:   3'- agUCCUA-GGACU----CCgCC----CACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 121581 0.66 0.791518
Target:  5'- cCuGGA-CCgcgGGGGCGGc-GGAGGGCa -3'
miRNA:   3'- aGuCCUaGGa--CUCCGCCcaCCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 176460 0.66 0.791518
Target:  5'- aUCGGGGggCCUGAGGCaauauagcacccGGGcccaaUGG-GGACc -3'
miRNA:   3'- -AGUCCUa-GGACUCCG------------CCC-----ACCuCCUG- -5'
3781 5' -59.2 NC_001650.1 + 9753 0.66 0.791518
Target:  5'- aUCGGGGggCCUGAGGCaauauagcacccGGGcccaaUGG-GGACc -3'
miRNA:   3'- -AGUCCUa-GGACUCCG------------CCC-----ACCuCCUG- -5'
3781 5' -59.2 NC_001650.1 + 162388 0.66 0.791518
Target:  5'- -gAGGAUCUUGGGGaUGGG-GGuGGuCg -3'
miRNA:   3'- agUCCUAGGACUCC-GCCCaCCuCCuG- -5'
3781 5' -59.2 NC_001650.1 + 103234 0.67 0.786202
Target:  5'- uUCAGGAUCUggcacucguacagggUGcaGCGGGaguagagGGAGGACa -3'
miRNA:   3'- -AGUCCUAGG---------------ACucCGCCCa------CCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 38032 0.67 0.782632
Target:  5'- gUCAGGGagaUCCUGGcgaaCGGGgugcgcagGGGGGACa -3'
miRNA:   3'- -AGUCCU---AGGACUcc--GCCCa-------CCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 156625 0.67 0.771802
Target:  5'- -gAGGG-CC-GAGGCGGGcacgcccgggaaGGAGGGCa -3'
miRNA:   3'- agUCCUaGGaCUCCGCCCa-----------CCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 133875 0.67 0.771802
Target:  5'- -aGGGGUCCccggggcucgagGAGGcCGGGgccgGGAGgGACg -3'
miRNA:   3'- agUCCUAGGa-----------CUCC-GCCCa---CCUC-CUG- -5'
3781 5' -59.2 NC_001650.1 + 183588 0.67 0.764488
Target:  5'- cUCGGGGgagaCCgaccaaugGGGGCccGGG-GGAGGGCg -3'
miRNA:   3'- -AGUCCUa---GGa-------CUCCG--CCCaCCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 16881 0.67 0.764488
Target:  5'- cUCGGGGgagaCCgaccaaugGGGGCccGGG-GGAGGGCg -3'
miRNA:   3'- -AGUCCUa---GGa-------CUCCG--CCCaCCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 128314 0.67 0.764488
Target:  5'- aCAGGG-CCUucgcgGAGGCGGuGggcgaggugaUGGGGGACc -3'
miRNA:   3'- aGUCCUaGGA-----CUCCGCC-C----------ACCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 106484 0.67 0.755246
Target:  5'- -aAGGAagagaagGAGGCGGGUGuGGGGAg -3'
miRNA:   3'- agUCCUagga---CUCCGCCCAC-CUCCUg -5'
3781 5' -59.2 NC_001650.1 + 122873 0.67 0.745901
Target:  5'- cCAGGGUCa--AGGCGGGcaugcuGAGGGCg -3'
miRNA:   3'- aGUCCUAGgacUCCGCCCac----CUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 95085 0.67 0.745901
Target:  5'- gCGGGA-CCUauagaaGGGCGGGUGGuguagcAGGAUg -3'
miRNA:   3'- aGUCCUaGGAc-----UCCGCCCACC------UCCUG- -5'
3781 5' -59.2 NC_001650.1 + 122094 0.67 0.744961
Target:  5'- cCAGGGaacagccUCCUccGAGGa-GGUGGAGGAa -3'
miRNA:   3'- aGUCCU-------AGGA--CUCCgcCCACCUCCUg -5'
3781 5' -59.2 NC_001650.1 + 36649 0.67 0.744021
Target:  5'- aUCAGGGucuucUCCUGccugcuggacguGGcCGGGcgGGAGGGCu -3'
miRNA:   3'- -AGUCCU-----AGGACu-----------CC-GCCCa-CCUCCUG- -5'
3781 5' -59.2 NC_001650.1 + 3065 0.67 0.736463
Target:  5'- -aGGGGUCCa-AGGgGGGUGGcAGGGg -3'
miRNA:   3'- agUCCUAGGacUCCgCCCACC-UCCUg -5'
3781 5' -59.2 NC_001650.1 + 125027 0.67 0.736463
Target:  5'- -gGGGGUCCcgGGGGCGGaGgacgccgGGcGGGGCg -3'
miRNA:   3'- agUCCUAGGa-CUCCGCC-Ca------CC-UCCUG- -5'
3781 5' -59.2 NC_001650.1 + 24341 0.67 0.736463
Target:  5'- gCAGGAg---GAGGUGGG-GGAGG-Cg -3'
miRNA:   3'- aGUCCUaggaCUCCGCCCaCCUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.