miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3782 3' -60.9 NC_001650.1 + 46485 0.66 0.745066
Target:  5'- gGGGUCAgaAGUucacccuCUCCCcgGCgucGGGGCCGg -3'
miRNA:   3'- gUCCGGU--UCAu------GAGGGa-CG---CCCCGGU- -5'
3782 3' -60.9 NC_001650.1 + 3277 0.66 0.745066
Target:  5'- gCAGGCU----GCUCCCauugGCcgguaGGGGCCAc -3'
miRNA:   3'- -GUCCGGuucaUGAGGGa---CG-----CCCCGGU- -5'
3782 3' -60.9 NC_001650.1 + 169984 0.66 0.745066
Target:  5'- gCAGGCU----GCUCCCauugGCcgguaGGGGCCAc -3'
miRNA:   3'- -GUCCGGuucaUGAGGGa---CG-----CCCCGGU- -5'
3782 3' -60.9 NC_001650.1 + 83031 0.66 0.745066
Target:  5'- gCGGGCCGcGGU-CUCCCUGUuugacagguucGGGCCc -3'
miRNA:   3'- -GUCCGGU-UCAuGAGGGACGc----------CCCGGu -5'
3782 3' -60.9 NC_001650.1 + 131107 0.66 0.745066
Target:  5'- gAGGCgAGGggAgUCCCUcCGGGGCg- -3'
miRNA:   3'- gUCCGgUUCa-UgAGGGAcGCCCCGgu -5'
3782 3' -60.9 NC_001650.1 + 145496 0.66 0.742251
Target:  5'- aGGGCCGGGgGCUCCUgGUcagcuggagcuucaGGGGCUc -3'
miRNA:   3'- gUCCGGUUCaUGAGGGaCG--------------CCCCGGu -5'
3782 3' -60.9 NC_001650.1 + 155147 0.66 0.735652
Target:  5'- gCGGGCCGcgcccaGGUACUCCCccaCGucGGCCAc -3'
miRNA:   3'- -GUCCGGU------UCAUGAGGGac-GCc-CCGGU- -5'
3782 3' -60.9 NC_001650.1 + 25670 0.66 0.716582
Target:  5'- uGGGCCGGGUGCUgaCCCugauagacUGCaGGaGCCu -3'
miRNA:   3'- gUCCGGUUCAUGA--GGG--------ACGcCC-CGGu -5'
3782 3' -60.9 NC_001650.1 + 47751 0.66 0.716582
Target:  5'- aCGGGCUGA-UGCgggCCCUGUGcgaGGGCCu -3'
miRNA:   3'- -GUCCGGUUcAUGa--GGGACGC---CCCGGu -5'
3782 3' -60.9 NC_001650.1 + 40390 0.66 0.716582
Target:  5'- gGGGCgCGAGggcgAgUCaCCaGCGGGGUCAc -3'
miRNA:   3'- gUCCG-GUUCa---UgAG-GGaCGCCCCGGU- -5'
3782 3' -60.9 NC_001650.1 + 156583 0.66 0.715621
Target:  5'- cCAGGCCGAcgcccagcucggcGcagaACUCCCUGCa-GGCCAu -3'
miRNA:   3'- -GUCCGGUU-------------Ca---UGAGGGACGccCCGGU- -5'
3782 3' -60.9 NC_001650.1 + 81494 0.66 0.715621
Target:  5'- gAGGCCAGGUugaccaggaacucGCucagcUCCCUGaacaCGGGGCa- -3'
miRNA:   3'- gUCCGGUUCA-------------UG-----AGGGAC----GCCCCGgu -5'
3782 3' -60.9 NC_001650.1 + 114495 0.66 0.706942
Target:  5'- aGGGCCGuccGGagacUGCUCCU--CGGGGCCu -3'
miRNA:   3'- gUCCGGU---UC----AUGAGGGacGCCCCGGu -5'
3782 3' -60.9 NC_001650.1 + 161693 0.66 0.706942
Target:  5'- gAGGCgCGGGUGg-CCCcggugaagcUGUGGGGCCu -3'
miRNA:   3'- gUCCG-GUUCAUgaGGG---------ACGCCCCGGu -5'
3782 3' -60.9 NC_001650.1 + 147997 0.66 0.706942
Target:  5'- uCAGGuUCAGGUugUacaCCUGCGuGGCCc -3'
miRNA:   3'- -GUCC-GGUUCAugAg--GGACGCcCCGGu -5'
3782 3' -60.9 NC_001650.1 + 128369 0.66 0.706942
Target:  5'- gAGGaacgugacguCCGAGUucacggACUCCCUggccGCGGGGCaCAu -3'
miRNA:   3'- gUCC----------GGUUCA------UGAGGGA----CGCCCCG-GU- -5'
3782 3' -60.9 NC_001650.1 + 136054 0.66 0.687492
Target:  5'- gGGGCagaGAGUACUCCCccagccccGCGGccGCCAu -3'
miRNA:   3'- gUCCGg--UUCAUGAGGGa-------CGCCc-CGGU- -5'
3782 3' -60.9 NC_001650.1 + 145538 0.66 0.687492
Target:  5'- aUAGGCUggGU-CUCUCUGgugaUGGGGCgAg -3'
miRNA:   3'- -GUCCGGuuCAuGAGGGAC----GCCCCGgU- -5'
3782 3' -60.9 NC_001650.1 + 29017 0.66 0.687492
Target:  5'- aCGGGCUgGAGUACUCCCUGgaCGcccuGGGCa- -3'
miRNA:   3'- -GUCCGG-UUCAUGAGGGAC--GC----CCCGgu -5'
3782 3' -60.9 NC_001650.1 + 60616 0.67 0.66787
Target:  5'- gGGGCguAG-GCgCCCUGCcgguugaggGGGGCCAc -3'
miRNA:   3'- gUCCGguUCaUGaGGGACG---------CCCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.