miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3782 5' -53.7 NC_001650.1 + 135299 0.66 0.978917
Target:  5'- uGUUGACCACCGucAGGG-CggCgGGAg -3'
miRNA:   3'- -CGACUGGUGGUucUCCCaGaaGaCCU- -5'
3782 5' -53.7 NC_001650.1 + 17223 0.66 0.976552
Target:  5'- -aUGGCCGCCAGG-GGGUUguggccucugUCUGa- -3'
miRNA:   3'- cgACUGGUGGUUCuCCCAGa---------AGACcu -5'
3782 5' -53.7 NC_001650.1 + 183930 0.66 0.976552
Target:  5'- -aUGGCCGCCAGG-GGGUUguggccucugUCUGa- -3'
miRNA:   3'- cgACUGGUGGUUCuCCCAGa---------AGACcu -5'
3782 5' -53.7 NC_001650.1 + 90151 0.66 0.973998
Target:  5'- uGCUGAgCCugC-AGAGGuUCUUCUGc- -3'
miRNA:   3'- -CGACU-GGugGuUCUCCcAGAAGACcu -5'
3782 5' -53.7 NC_001650.1 + 75447 0.66 0.971248
Target:  5'- aGC-GAgCGCCGcgAGAGGGgCUgucgCUGGAa -3'
miRNA:   3'- -CGaCUgGUGGU--UCUCCCaGAa---GACCU- -5'
3782 5' -53.7 NC_001650.1 + 128702 0.66 0.971248
Target:  5'- cCUGGCCgACguGGAGGGcaugCUGGAu -3'
miRNA:   3'- cGACUGG-UGguUCUCCCagaaGACCU- -5'
3782 5' -53.7 NC_001650.1 + 51849 0.66 0.971248
Target:  5'- aGCUcGGCCGagggCGAcAGGGUCuUUCUGGGc -3'
miRNA:   3'- -CGA-CUGGUg---GUUcUCCCAG-AAGACCU- -5'
3782 5' -53.7 NC_001650.1 + 51521 0.66 0.968295
Target:  5'- aGCUGGCCcaGCCAcuggccacgcAGAGGGaCUgaggCUGuGAa -3'
miRNA:   3'- -CGACUGG--UGGU----------UCUCCCaGAa---GAC-CU- -5'
3782 5' -53.7 NC_001650.1 + 96851 0.67 0.965133
Target:  5'- cGCUGGCCauaaugcugGCCAAGAGGcaUUUCgUGGu -3'
miRNA:   3'- -CGACUGG---------UGGUUCUCCcaGAAG-ACCu -5'
3782 5' -53.7 NC_001650.1 + 6163 0.67 0.965133
Target:  5'- gGCUGuGCCugUAAGAGaGGUgUgaucagguUCUGGGa -3'
miRNA:   3'- -CGAC-UGGugGUUCUC-CCAgA--------AGACCU- -5'
3782 5' -53.7 NC_001650.1 + 172870 0.67 0.965133
Target:  5'- gGCUGuGCCugUAAGAGaGGUgUgaucagguUCUGGGa -3'
miRNA:   3'- -CGAC-UGGugGUUCUC-CCAgA--------AGACCU- -5'
3782 5' -53.7 NC_001650.1 + 42545 0.67 0.961756
Target:  5'- --gGACCGCCGcacGGAGGGcCUcggggcCUGGGg -3'
miRNA:   3'- cgaCUGGUGGU---UCUCCCaGAa-----GACCU- -5'
3782 5' -53.7 NC_001650.1 + 45398 0.67 0.958158
Target:  5'- aGUUGACCcgcgcaACCGAGAGGGggaccaaaugagUCcaCUGGGa -3'
miRNA:   3'- -CGACUGG------UGGUUCUCCC------------AGaaGACCU- -5'
3782 5' -53.7 NC_001650.1 + 130656 0.67 0.954335
Target:  5'- cCUGGagGCCAGGAGGGUCaccgGGGg -3'
miRNA:   3'- cGACUggUGGUUCUCCCAGaagaCCU- -5'
3782 5' -53.7 NC_001650.1 + 47850 0.67 0.954335
Target:  5'- --gGACCAUgcuUGAGGGGGUgUUUCUGGGc -3'
miRNA:   3'- cgaCUGGUG---GUUCUCCCA-GAAGACCU- -5'
3782 5' -53.7 NC_001650.1 + 88613 0.67 0.954335
Target:  5'- --gGACgGCCAGGGGGGUCUacucCUGc- -3'
miRNA:   3'- cgaCUGgUGGUUCUCCCAGAa---GACcu -5'
3782 5' -53.7 NC_001650.1 + 172103 0.67 0.950282
Target:  5'- gGgUGugUGCCAGGGGGGUUUggggUGGGg -3'
miRNA:   3'- -CgACugGUGGUUCUCCCAGAag--ACCU- -5'
3782 5' -53.7 NC_001650.1 + 5396 0.67 0.950282
Target:  5'- gGgUGugUGCCAGGGGGGUUUggggUGGGg -3'
miRNA:   3'- -CgACugGUGGUUCUCCCAGAag--ACCU- -5'
3782 5' -53.7 NC_001650.1 + 61536 0.67 0.950282
Target:  5'- cCUGuACCGCCucaggcagcccAGGAGGGUCUccuugaccgcCUGGAa -3'
miRNA:   3'- cGAC-UGGUGG-----------UUCUCCCAGAa---------GACCU- -5'
3782 5' -53.7 NC_001650.1 + 155050 0.68 0.936716
Target:  5'- uGUUGACCACCAGGGGGaG-CgugacuaUGGGc -3'
miRNA:   3'- -CGACUGGUGGUUCUCC-CaGaag----ACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.