miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3783 3' -61.7 NC_001650.1 + 141261 0.66 0.745185
Target:  5'- cCUCggCCCCGCG-GCGGCgAgcgGG-CGCg -3'
miRNA:   3'- -GAG--GGGGCGCuCGCCGgUa--CCaGUGg -5'
3783 3' -61.7 NC_001650.1 + 115324 0.66 0.745185
Target:  5'- -aCCCgCCGCGcaUGGCCGUcuacaGGaUCACCa -3'
miRNA:   3'- gaGGG-GGCGCucGCCGGUA-----CC-AGUGG- -5'
3783 3' -61.7 NC_001650.1 + 107791 0.66 0.745185
Target:  5'- -aCCCUgGUGgcGGUGGUCAUGGcgCACUa -3'
miRNA:   3'- gaGGGGgCGC--UCGCCGGUACCa-GUGG- -5'
3783 3' -61.7 NC_001650.1 + 101989 0.66 0.745185
Target:  5'- cCUCCCCCGCccGCuGCCcUGccUCGCCc -3'
miRNA:   3'- -GAGGGGGCGcuCGcCGGuACc-AGUGG- -5'
3783 3' -61.7 NC_001650.1 + 50643 0.66 0.735984
Target:  5'- -gCCCCCuCGAGgGGCCGgugcccgcgGGggGCCu -3'
miRNA:   3'- gaGGGGGcGCUCgCCGGUa--------CCagUGG- -5'
3783 3' -61.7 NC_001650.1 + 108192 0.66 0.735984
Target:  5'- gUCCCCUucccgggaGUGguAGUGGUgGUGGUgGCCg -3'
miRNA:   3'- gAGGGGG--------CGC--UCGCCGgUACCAgUGG- -5'
3783 3' -61.7 NC_001650.1 + 104962 0.66 0.735984
Target:  5'- uUCCcacgCCCGCGAGguucCCAUGGUC-CCg -3'
miRNA:   3'- gAGG----GGGCGCUCgcc-GGUACCAGuGG- -5'
3783 3' -61.7 NC_001650.1 + 464 0.66 0.73506
Target:  5'- cCUCCCCgccccauUGCccaacucugggaGAGUGGCCaAUGGggagCGCCu -3'
miRNA:   3'- -GAGGGG-------GCG------------CUCGCCGG-UACCa---GUGG- -5'
3783 3' -61.7 NC_001650.1 + 167171 0.66 0.73506
Target:  5'- cCUCCCCgccccauUGCccaacucugggaGAGUGGCCaAUGGggagCGCCu -3'
miRNA:   3'- -GAGGGG-------GCG------------CUCGCCGG-UACCa---GUGG- -5'
3783 3' -61.7 NC_001650.1 + 67183 0.66 0.726703
Target:  5'- aUCCgCaggGCG-GCGGCCA-GGUCcCCg -3'
miRNA:   3'- gAGGgGg--CGCuCGCCGGUaCCAGuGG- -5'
3783 3' -61.7 NC_001650.1 + 17165 0.66 0.726703
Target:  5'- gCUUCCCacUGAGaUGGCCAcccccgaggUGGUCGCCc -3'
miRNA:   3'- -GAGGGGgcGCUC-GCCGGU---------ACCAGUGG- -5'
3783 3' -61.7 NC_001650.1 + 72521 0.66 0.726703
Target:  5'- -gCCCCCGCGGucaacGgGGCCGaccccauccUGGacCACCu -3'
miRNA:   3'- gaGGGGGCGCU-----CgCCGGU---------ACCa-GUGG- -5'
3783 3' -61.7 NC_001650.1 + 183872 0.66 0.726703
Target:  5'- gCUUCCCacUGAGaUGGCCAcccccgaggUGGUCGCCc -3'
miRNA:   3'- -GAGGGGgcGCUC-GCCGGU---------ACCAGUGG- -5'
3783 3' -61.7 NC_001650.1 + 169167 0.66 0.71735
Target:  5'- uUCCCCC-CcAGCGGCCcgcUGG-CAUCu -3'
miRNA:   3'- gAGGGGGcGcUCGCCGGu--ACCaGUGG- -5'
3783 3' -61.7 NC_001650.1 + 134002 0.66 0.71735
Target:  5'- cCUCCgCCCGUaGGUGacgguGCCGUcGGUCACa -3'
miRNA:   3'- -GAGG-GGGCGcUCGC-----CGGUA-CCAGUGg -5'
3783 3' -61.7 NC_001650.1 + 2460 0.66 0.71735
Target:  5'- uUCCCCC-CcAGCGGCCcgcUGG-CAUCu -3'
miRNA:   3'- gAGGGGGcGcUCGCCGGu--ACCaGUGG- -5'
3783 3' -61.7 NC_001650.1 + 48142 0.66 0.71735
Target:  5'- -gCCCCCGCcuucauGGCGGCCGcGGg-GCUg -3'
miRNA:   3'- gaGGGGGCGc-----UCGCCGGUaCCagUGG- -5'
3783 3' -61.7 NC_001650.1 + 75526 0.66 0.71735
Target:  5'- -aCCCCCGagGAgucgcccagcGCGGCCA-GGUCcagcagGCCg -3'
miRNA:   3'- gaGGGGGCg-CU----------CGCCGGUaCCAG------UGG- -5'
3783 3' -61.7 NC_001650.1 + 44315 0.66 0.71735
Target:  5'- -aCagCCGCGAGCGGCUcgGGU-GCUu -3'
miRNA:   3'- gaGggGGCGCUCGCCGGuaCCAgUGG- -5'
3783 3' -61.7 NC_001650.1 + 26819 0.66 0.707931
Target:  5'- -gCCCCUuCGAGuUGGCCGaccUGGggCACCu -3'
miRNA:   3'- gaGGGGGcGCUC-GCCGGU---ACCa-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.