miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3783 5' -53.2 NC_001650.1 + 145276 0.65 0.988274
Target:  5'- aCGGUAUCUCGcACACCGgugucucuguugauaGGGcGAGAu -3'
miRNA:   3'- gGUCAUGGAGU-UGUGGCag-------------UCC-CUCU- -5'
3783 5' -53.2 NC_001650.1 + 18853 0.66 0.987227
Target:  5'- cCUGGaUGCCUCAGgucauUACCGgacacgaGGGGAGAc -3'
miRNA:   3'- -GGUC-AUGGAGUU-----GUGGCag-----UCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 55087 0.66 0.987227
Target:  5'- cCCcGUGuCCUCGGCcCCGggCGcGGGGGAg -3'
miRNA:   3'- -GGuCAU-GGAGUUGuGGCa-GU-CCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 120526 0.66 0.983836
Target:  5'- -aGGUGCCUCuggGCGCCGgcgaccugCAGGGc-- -3'
miRNA:   3'- ggUCAUGGAGu--UGUGGCa-------GUCCCucu -5'
3783 5' -53.2 NC_001650.1 + 27816 0.66 0.983083
Target:  5'- gCCAGcUGCgUCAACACCcuguucuacaggcUCAGGGAc- -3'
miRNA:   3'- -GGUC-AUGgAGUUGUGGc------------AGUCCCUcu -5'
3783 5' -53.2 NC_001650.1 + 99538 0.66 0.981904
Target:  5'- aCAGgcCgCUCAGCucgUCGUaCAGGGGGAc -3'
miRNA:   3'- gGUCauG-GAGUUGu--GGCA-GUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 110823 0.67 0.977527
Target:  5'- gCCAGgcUGCC-CAGCccauucCCGUCauAGGGGGAg -3'
miRNA:   3'- -GGUC--AUGGaGUUGu-----GGCAG--UCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 131286 0.67 0.977527
Target:  5'- cCCGGccCCUCcgGGCGCCGggaugauuuuUUGGGGAGAa -3'
miRNA:   3'- -GGUCauGGAG--UUGUGGC----------AGUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 74777 0.67 0.977527
Target:  5'- uCCAGgccgcagGCCUCGuuCACCuuguagGUguGGGGGAg -3'
miRNA:   3'- -GGUCa------UGGAGUu-GUGG------CAguCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 107989 0.67 0.977527
Target:  5'- aCUGGUACggcggCUCAucgacGCugCGUCccAGGGAGAc -3'
miRNA:   3'- -GGUCAUG-----GAGU-----UGugGCAG--UCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 92759 0.67 0.977527
Target:  5'- gUCAGgACCUCAccuCGCUGU--GGGAGAg -3'
miRNA:   3'- -GGUCaUGGAGUu--GUGGCAguCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 137711 0.67 0.977289
Target:  5'- cCCGGUcgccgccGCCcCGACGCCG---GGGAGAg -3'
miRNA:   3'- -GGUCA-------UGGaGUUGUGGCaguCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 99136 0.67 0.975066
Target:  5'- cCCGGgugaugGCCUCAAUGgC--CAGGGAGAu -3'
miRNA:   3'- -GGUCa-----UGGAGUUGUgGcaGUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 131465 0.67 0.975066
Target:  5'- cCCugaucuuCCUCGagggggACAUgGUCAGGGAGAc -3'
miRNA:   3'- -GGucau---GGAGU------UGUGgCAGUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 52685 0.67 0.975066
Target:  5'- gCAGggacuuggGCCUCucGgGCCGcagCGGGGAGAc -3'
miRNA:   3'- gGUCa-------UGGAGu-UgUGGCa--GUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 131160 0.67 0.972415
Target:  5'- uCCAaaaccGCCUCGcgGCCGUCauuuuGGGGAGAa -3'
miRNA:   3'- -GGUca---UGGAGUugUGGCAG-----UCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 27475 0.67 0.972415
Target:  5'- uCCAGaagcagGCCUCca-ACCGgggcggcggCGGGGAGAa -3'
miRNA:   3'- -GGUCa-----UGGAGuugUGGCa--------GUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 15755 0.67 0.972415
Target:  5'- aCAGgGCCUcCAugGCCaaUGGGGAGAg -3'
miRNA:   3'- gGUCaUGGA-GUugUGGcaGUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 182462 0.67 0.972415
Target:  5'- aCAGgGCCUcCAugGCCaaUGGGGAGAg -3'
miRNA:   3'- gGUCaUGGA-GUugUGGcaGUCCCUCU- -5'
3783 5' -53.2 NC_001650.1 + 23066 0.67 0.969566
Target:  5'- aCAGgaGCCcCGACuACUGUCAGGGuGGc -3'
miRNA:   3'- gGUCa-UGGaGUUG-UGGCAGUCCCuCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.