miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3786 3' -55.7 NC_001650.1 + 169111 0.66 0.954322
Target:  5'- cGGC-CCAGcUGgCACCCUGCCcgggucuguaaAGAGGa -3'
miRNA:   3'- cCCGaGGUC-ACaGUGGGGUGG-----------UUUCC- -5'
3786 3' -55.7 NC_001650.1 + 2404 0.66 0.954322
Target:  5'- cGGC-CCAGcUGgCACCCUGCCcgggucuguaaAGAGGa -3'
miRNA:   3'- cCCGaGGUC-ACaGUGGGGUGG-----------UUUCC- -5'
3786 3' -55.7 NC_001650.1 + 38328 0.66 0.954322
Target:  5'- cGGGUUCCAGUGgaggCACUUCgggGCCGc--- -3'
miRNA:   3'- -CCCGAGGUCACa---GUGGGG---UGGUuucc -5'
3786 3' -55.7 NC_001650.1 + 26742 0.66 0.953936
Target:  5'- aGGUUCUaccucagGGUGUCcUCCCACCAGGu- -3'
miRNA:   3'- cCCGAGG-------UCACAGuGGGGUGGUUUcc -5'
3786 3' -55.7 NC_001650.1 + 73769 0.66 0.952369
Target:  5'- uGGCUCCGGgccucuacaGCCCCugCAggcaguucuucaacAAGGa -3'
miRNA:   3'- cCCGAGGUCacag-----UGGGGugGU--------------UUCC- -5'
3786 3' -55.7 NC_001650.1 + 156037 0.66 0.951972
Target:  5'- uGGGCUCCAccGUC-CCUaucugauucacaaaaCAgCCAAAGGg -3'
miRNA:   3'- -CCCGAGGUcaCAGuGGG---------------GU-GGUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 113563 0.66 0.95036
Target:  5'- uGGGCcuugUCCAGgaagaagGUgUGCUCCACCAGGuGGg -3'
miRNA:   3'- -CCCG----AGGUCa------CA-GUGGGGUGGUUU-CC- -5'
3786 3' -55.7 NC_001650.1 + 128086 0.66 0.95036
Target:  5'- gGGGCUCauauc-CGCCCCACCAc--- -3'
miRNA:   3'- -CCCGAGgucacaGUGGGGUGGUuucc -5'
3786 3' -55.7 NC_001650.1 + 82649 0.66 0.95036
Target:  5'- gGGGCgggagCCAuGUGa-ACCCCGCCc-AGGu -3'
miRNA:   3'- -CCCGa----GGU-CACagUGGGGUGGuuUCC- -5'
3786 3' -55.7 NC_001650.1 + 133182 0.66 0.946175
Target:  5'- -cGCaCCAGgGUCACgCCCACCuugaucugAGAGGg -3'
miRNA:   3'- ccCGaGGUCaCAGUG-GGGUGG--------UUUCC- -5'
3786 3' -55.7 NC_001650.1 + 30387 0.66 0.946175
Target:  5'- aGGCUCaaCAGcgucuucuauUGUCugCCCG-CAGAGGg -3'
miRNA:   3'- cCCGAG--GUC----------ACAGugGGGUgGUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 66793 0.66 0.941765
Target:  5'- cGGGCguacCCGGUGa-ACCUCGCCAGcuccucguccgcGGGc -3'
miRNA:   3'- -CCCGa---GGUCACagUGGGGUGGUU------------UCC- -5'
3786 3' -55.7 NC_001650.1 + 49526 0.66 0.941765
Target:  5'- gGGGCaUCCGGgggGUCAgCCUcUCAGAGc -3'
miRNA:   3'- -CCCG-AGGUCa--CAGUgGGGuGGUUUCc -5'
3786 3' -55.7 NC_001650.1 + 5762 0.66 0.941311
Target:  5'- gGGGUcCCGGUgGUCGCggugaggUCCACgGGAGGu -3'
miRNA:   3'- -CCCGaGGUCA-CAGUG-------GGGUGgUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 172469 0.66 0.941311
Target:  5'- gGGGUcCCGGUgGUCGCggugaggUCCACgGGAGGu -3'
miRNA:   3'- -CCCGaGGUCA-CAGUG-------GGGUGgUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 42567 0.66 0.939009
Target:  5'- gGGGC-CUgggGGUGUUuugcuucgcgcggggGCCCCcgagGCCGAAGGu -3'
miRNA:   3'- -CCCGaGG---UCACAG---------------UGGGG----UGGUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 141700 0.66 0.937126
Target:  5'- cGGGCgcgCCGGUGgccacCugCCCAaacaCAcuGGGGa -3'
miRNA:   3'- -CCCGa--GGUCACa----GugGGGUg---GU--UUCC- -5'
3786 3' -55.7 NC_001650.1 + 22902 0.66 0.937126
Target:  5'- gGGGUUCCuuuguuUGUCACCCC-CUGAAa- -3'
miRNA:   3'- -CCCGAGGuc----ACAGUGGGGuGGUUUcc -5'
3786 3' -55.7 NC_001650.1 + 24962 0.66 0.937126
Target:  5'- uGGGC-CCAGgg-CACCC-ACCuGGGGu -3'
miRNA:   3'- -CCCGaGGUCacaGUGGGgUGGuUUCC- -5'
3786 3' -55.7 NC_001650.1 + 95728 0.66 0.932259
Target:  5'- -cGC-CCGGcGUCcccGCCCCGCCcGGAGGa -3'
miRNA:   3'- ccCGaGGUCaCAG---UGGGGUGG-UUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.