miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3786 3' -55.7 NC_001650.1 + 95728 0.66 0.932259
Target:  5'- -cGC-CCGGcGUCcccGCCCCGCCcGGAGGa -3'
miRNA:   3'- ccCGaGGUCaCAG---UGGGGUGG-UUUCC- -5'
3786 3' -55.7 NC_001650.1 + 62159 0.66 0.932259
Target:  5'- gGGGCgCCugauGUGggccaGCCCCGCCGcguccucgAAGGc -3'
miRNA:   3'- -CCCGaGGu---CACag---UGGGGUGGU--------UUCC- -5'
3786 3' -55.7 NC_001650.1 + 178528 0.66 0.932259
Target:  5'- aGGGCcCCgGGUGaUUACaCCCAC-AGAGGg -3'
miRNA:   3'- -CCCGaGG-UCAC-AGUG-GGGUGgUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 11821 0.66 0.932259
Target:  5'- aGGGCcCCgGGUGaUUACaCCCAC-AGAGGg -3'
miRNA:   3'- -CCCGaGG-UCAC-AGUG-GGGUGgUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 18103 0.66 0.931759
Target:  5'- uGGGCcCCuGUGUaaaggucaaaggcCACCUCugCAAAGa -3'
miRNA:   3'- -CCCGaGGuCACA-------------GUGGGGugGUUUCc -5'
3786 3' -55.7 NC_001650.1 + 50744 0.66 0.930753
Target:  5'- aGGGC-CgCGGUGggCGCCgCCACCAccugcucgcaggacGGGGc -3'
miRNA:   3'- -CCCGaG-GUCACa-GUGG-GGUGGU--------------UUCC- -5'
3786 3' -55.7 NC_001650.1 + 171432 0.67 0.92716
Target:  5'- gGGGCUCCGGaGgcccuccgUGCCCgGCUcgGGGa -3'
miRNA:   3'- -CCCGAGGUCaCa-------GUGGGgUGGuuUCC- -5'
3786 3' -55.7 NC_001650.1 + 137705 0.67 0.92716
Target:  5'- aGGGCgCCcg-GUCGCCgCCGCCccgacgccggggAGAGGg -3'
miRNA:   3'- -CCCGaGGucaCAGUGG-GGUGG------------UUUCC- -5'
3786 3' -55.7 NC_001650.1 + 74263 0.67 0.92716
Target:  5'- uGGGCUCU-GUGgUACCCC-UCAAGGa -3'
miRNA:   3'- -CCCGAGGuCACaGUGGGGuGGUUUCc -5'
3786 3' -55.7 NC_001650.1 + 4725 0.67 0.92716
Target:  5'- gGGGCUCCGGaGgcccuccgUGCCCgGCUcgGGGa -3'
miRNA:   3'- -CCCGAGGUCaCa-------GUGGGgUGGuuUCC- -5'
3786 3' -55.7 NC_001650.1 + 156180 0.67 0.92716
Target:  5'- uGGaugUCCAGgGUCACCCCgcacugcccgGCCAGGGc -3'
miRNA:   3'- cCCg--AGGUCaCAGUGGGG----------UGGUUUCc -5'
3786 3' -55.7 NC_001650.1 + 68975 0.67 0.921832
Target:  5'- uGGCUCCGGgGUCcuucuuguagACCgCCACCuugagauAGGg -3'
miRNA:   3'- cCCGAGGUCaCAG----------UGG-GGUGGuu-----UCC- -5'
3786 3' -55.7 NC_001650.1 + 125679 0.67 0.921286
Target:  5'- gGGGCgacacccccaucuUCCAGcacGUgGCCCUgugugccauggGCCAGAGGa -3'
miRNA:   3'- -CCCG-------------AGGUCa--CAgUGGGG-----------UGGUUUCC- -5'
3786 3' -55.7 NC_001650.1 + 5196 0.67 0.916273
Target:  5'- uGGCUCUAG-Gg-GCCCUGCCAGgcauGGGg -3'
miRNA:   3'- cCCGAGGUCaCagUGGGGUGGUU----UCC- -5'
3786 3' -55.7 NC_001650.1 + 163180 0.67 0.916273
Target:  5'- gGGGCaUCgguggCGGUGUCuACCCUuucaGCCAcGGGg -3'
miRNA:   3'- -CCCG-AG-----GUCACAG-UGGGG----UGGUuUCC- -5'
3786 3' -55.7 NC_001650.1 + 171903 0.67 0.916273
Target:  5'- uGGCUCUAG-Gg-GCCCUGCCAGgcauGGGg -3'
miRNA:   3'- cCCGAGGUCaCagUGGGGUGGUU----UCC- -5'
3786 3' -55.7 NC_001650.1 + 134679 0.67 0.910484
Target:  5'- cGGGCUgC-GUGUCGCCCacgACCGugauguccAGGa -3'
miRNA:   3'- -CCCGAgGuCACAGUGGGg--UGGUu-------UCC- -5'
3786 3' -55.7 NC_001650.1 + 129739 0.67 0.90508
Target:  5'- gGGGCUCUauugcucaacaaaguGGUGUCcaugcuucccaacgGCCCCGCCu---- -3'
miRNA:   3'- -CCCGAGG---------------UCACAG--------------UGGGGUGGuuucc -5'
3786 3' -55.7 NC_001650.1 + 111367 0.67 0.904468
Target:  5'- uGGGCUgCAGgGUgGCggCCACCAuGGGg -3'
miRNA:   3'- -CCCGAgGUCaCAgUGg-GGUGGUuUCC- -5'
3786 3' -55.7 NC_001650.1 + 145936 0.67 0.904468
Target:  5'- cGGGCUCCcuGUGccccaGCCCgGCCcgggcGAGGa -3'
miRNA:   3'- -CCCGAGGu-CACag---UGGGgUGGu----UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.