miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3786 5' -55.2 NC_001650.1 + 96846 0.66 0.9528
Target:  5'- gGGCgCGCUGGCCA----UAAUGCUGGc -3'
miRNA:   3'- -CCG-GCGACCGGUuagcGUUGUGACUc -5'
3786 5' -55.2 NC_001650.1 + 129054 0.66 0.9528
Target:  5'- aGGCgG-UGGCCGcgCGCGACcccgccagGCUGGa -3'
miRNA:   3'- -CCGgCgACCGGUuaGCGUUG--------UGACUc -5'
3786 5' -55.2 NC_001650.1 + 84552 0.66 0.9528
Target:  5'- gGGCUGCgaggGGCUGAgggacugucUCGuCAACcuGCUGAGc -3'
miRNA:   3'- -CCGGCGa---CCGGUU---------AGC-GUUG--UGACUC- -5'
3786 5' -55.2 NC_001650.1 + 48062 0.66 0.9524
Target:  5'- aGGCCGCggggGGCgccuuCAggCGCAuggccagggacguGCACUGGa -3'
miRNA:   3'- -CCGGCGa---CCG-----GUuaGCGU-------------UGUGACUc -5'
3786 5' -55.2 NC_001650.1 + 81374 0.66 0.948689
Target:  5'- aGCgUGUUGGCCGcgUGCGGCGCUu-- -3'
miRNA:   3'- cCG-GCGACCGGUuaGCGUUGUGAcuc -5'
3786 5' -55.2 NC_001650.1 + 118518 0.66 0.948689
Target:  5'- aGCaGCUGGCCAGguaGCucuGC-CUGAGc -3'
miRNA:   3'- cCGgCGACCGGUUag-CGu--UGuGACUC- -5'
3786 5' -55.2 NC_001650.1 + 37591 0.66 0.948689
Target:  5'- gGGCgGC-GGCCGAgCGCcuguGCGCcaUGAGg -3'
miRNA:   3'- -CCGgCGaCCGGUUaGCGu---UGUG--ACUC- -5'
3786 5' -55.2 NC_001650.1 + 105421 0.66 0.948689
Target:  5'- gGGCCGagcGCCGGUCGCGGCGgcGAu -3'
miRNA:   3'- -CCGGCgacCGGUUAGCGUUGUgaCUc -5'
3786 5' -55.2 NC_001650.1 + 60269 0.66 0.944347
Target:  5'- uGGCCGCcGGCUgc-UGCG--GCUGAGg -3'
miRNA:   3'- -CCGGCGaCCGGuuaGCGUugUGACUC- -5'
3786 5' -55.2 NC_001650.1 + 77819 0.66 0.944347
Target:  5'- cGGCCuGCUGGCCucccugggcgaGGggGCAAC-CUGGa -3'
miRNA:   3'- -CCGG-CGACCGG-----------UUagCGUUGuGACUc -5'
3786 5' -55.2 NC_001650.1 + 113165 0.66 0.939771
Target:  5'- uGGCCauccuguucuGCUGGcCCAGgccCGCcGCGCUcGAGa -3'
miRNA:   3'- -CCGG----------CGACC-GGUUa--GCGuUGUGA-CUC- -5'
3786 5' -55.2 NC_001650.1 + 102594 0.66 0.939771
Target:  5'- gGGgaGCUGGCCcg-CGCGGCGCg--- -3'
miRNA:   3'- -CCggCGACCGGuuaGCGUUGUGacuc -5'
3786 5' -55.2 NC_001650.1 + 122859 0.66 0.939771
Target:  5'- cGCCGCuagggUGGCCAggGUCaagGCGggcAUGCUGAGg -3'
miRNA:   3'- cCGGCG-----ACCGGU--UAG---CGU---UGUGACUC- -5'
3786 5' -55.2 NC_001650.1 + 49298 0.66 0.939771
Target:  5'- gGGCCuggaGCUGGCCAG-CGUGACcgaguACUGcGg -3'
miRNA:   3'- -CCGG----CGACCGGUUaGCGUUG-----UGACuC- -5'
3786 5' -55.2 NC_001650.1 + 56569 0.66 0.939771
Target:  5'- cGCCGCgagGGCCAA-CuCAGCGCccGAGc -3'
miRNA:   3'- cCGGCGa--CCGGUUaGcGUUGUGa-CUC- -5'
3786 5' -55.2 NC_001650.1 + 120849 0.66 0.939301
Target:  5'- uGGagCGCUGGCUGG-CGCucuccuacgcggcGGCGCUGGGg -3'
miRNA:   3'- -CCg-GCGACCGGUUaGCG-------------UUGUGACUC- -5'
3786 5' -55.2 NC_001650.1 + 58492 0.66 0.93496
Target:  5'- cGGCCcgguuuuuCUGGCCGAggCGCcGGCGuCUGGGa -3'
miRNA:   3'- -CCGGc-------GACCGGUUa-GCG-UUGU-GACUC- -5'
3786 5' -55.2 NC_001650.1 + 70847 0.66 0.93496
Target:  5'- uGGCCauGCUGGCCAga-GCGGCAacuccaucgUGGGg -3'
miRNA:   3'- -CCGG--CGACCGGUuagCGUUGUg--------ACUC- -5'
3786 5' -55.2 NC_001650.1 + 109377 0.67 0.928874
Target:  5'- uGGCCGgcaggagcCUGGCCAGggaguugggcaGCAggGCGCUGAu -3'
miRNA:   3'- -CCGGC--------GACCGGUUag---------CGU--UGUGACUc -5'
3786 5' -55.2 NC_001650.1 + 115054 0.67 0.924626
Target:  5'- uGGCgGaCUGGCCGGaccuggaggcgcUCGCGcCcCUGAGg -3'
miRNA:   3'- -CCGgC-GACCGGUU------------AGCGUuGuGACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.