miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3786 5' -55.2 NC_001650.1 + 115054 0.67 0.924626
Target:  5'- uGGCgGaCUGGCCGGaccuggaggcgcUCGCGcCcCUGAGg -3'
miRNA:   3'- -CCGgC-GACCGGUU------------AGCGUuGuGACUC- -5'
3786 5' -55.2 NC_001650.1 + 73629 0.67 0.924626
Target:  5'- uGCUGCUggggcGGCCccuguUCGCGuuGCUGAGg -3'
miRNA:   3'- cCGGCGA-----CCGGuu---AGCGUugUGACUC- -5'
3786 5' -55.2 NC_001650.1 + 48137 0.67 0.919103
Target:  5'- aGGCCGCccccgccuucaUGGCgGc-CGCGGgGCUGGGg -3'
miRNA:   3'- -CCGGCG-----------ACCGgUuaGCGUUgUGACUC- -5'
3786 5' -55.2 NC_001650.1 + 49187 0.67 0.919103
Target:  5'- gGGCCGCgcgcUGGCCGAggGCGagcuGCGcCUGGu -3'
miRNA:   3'- -CCGGCG----ACCGGUUagCGU----UGU-GACUc -5'
3786 5' -55.2 NC_001650.1 + 112199 0.67 0.913343
Target:  5'- gGGCCGCUauugGGUCuGUUGuCAACACcaGAGg -3'
miRNA:   3'- -CCGGCGA----CCGGuUAGC-GUUGUGa-CUC- -5'
3786 5' -55.2 NC_001650.1 + 57549 0.67 0.907347
Target:  5'- gGGCUgggGCUgGGCCugugGUUGCAGCugcgGCUGGGg -3'
miRNA:   3'- -CCGG---CGA-CCGGu---UAGCGUUG----UGACUC- -5'
3786 5' -55.2 NC_001650.1 + 93225 0.67 0.90612
Target:  5'- uGCCGCgccacGGCCGAaacgcgcccgcgCGCGACAUgGAGg -3'
miRNA:   3'- cCGGCGa----CCGGUUa-----------GCGUUGUGaCUC- -5'
3786 5' -55.2 NC_001650.1 + 161568 0.67 0.901118
Target:  5'- cGGCCGCUGucguGCgAggCGUAcgcgccccccgcGCGCUGGGg -3'
miRNA:   3'- -CCGGCGAC----CGgUuaGCGU------------UGUGACUC- -5'
3786 5' -55.2 NC_001650.1 + 52191 0.67 0.899204
Target:  5'- cGGCCGC-GGCCAG-CGCGuagaGCAggugcagggggcucUUGAGg -3'
miRNA:   3'- -CCGGCGaCCGGUUaGCGU----UGU--------------GACUC- -5'
3786 5' -55.2 NC_001650.1 + 14140 0.68 0.894658
Target:  5'- uGGCCGCcccgccccacgUGGCCcGUUGUAACcaaUGGGa -3'
miRNA:   3'- -CCGGCG-----------ACCGGuUAGCGUUGug-ACUC- -5'
3786 5' -55.2 NC_001650.1 + 164636 0.68 0.894658
Target:  5'- cGCCGCcccgGGCCg--CGCGGCACccGGGc -3'
miRNA:   3'- cCGGCGa---CCGGuuaGCGUUGUGa-CUC- -5'
3786 5' -55.2 NC_001650.1 + 180847 0.68 0.894658
Target:  5'- uGGCCGCcccgccccacgUGGCCcGUUGUAACcaaUGGGa -3'
miRNA:   3'- -CCGGCG-----------ACCGGuUAGCGUUGug-ACUC- -5'
3786 5' -55.2 NC_001650.1 + 83384 0.68 0.887969
Target:  5'- gGGCCGa-GGCCcugccGUCGguACcaGCUGAGg -3'
miRNA:   3'- -CCGGCgaCCGGu----UAGCguUG--UGACUC- -5'
3786 5' -55.2 NC_001650.1 + 138231 0.68 0.887969
Target:  5'- uGGCCcugcGCUcucGGCCAAUCGgCGcGCGgCUGAGa -3'
miRNA:   3'- -CCGG----CGA---CCGGUUAGC-GU-UGU-GACUC- -5'
3786 5' -55.2 NC_001650.1 + 67936 0.68 0.881056
Target:  5'- aGG-CGCUGGCCGccaaGCuGCACUGGc -3'
miRNA:   3'- -CCgGCGACCGGUuag-CGuUGUGACUc -5'
3786 5' -55.2 NC_001650.1 + 108678 0.68 0.881056
Target:  5'- cGGCCuGCUGGaCC--UgGCcGCGCUGGGc -3'
miRNA:   3'- -CCGG-CGACC-GGuuAgCGuUGUGACUC- -5'
3786 5' -55.2 NC_001650.1 + 131543 0.68 0.873923
Target:  5'- uGGCCGCccgggGGCUGGaCGCGGgGCgGAGa -3'
miRNA:   3'- -CCGGCGa----CCGGUUaGCGUUgUGaCUC- -5'
3786 5' -55.2 NC_001650.1 + 24025 0.69 0.859019
Target:  5'- gGGCCaagagGCUGGCCGucUCGgGGCACgacgucgGGGa -3'
miRNA:   3'- -CCGG-----CGACCGGUu-AGCgUUGUGa------CUC- -5'
3786 5' -55.2 NC_001650.1 + 156582 0.69 0.859019
Target:  5'- aGGCCGCguaGGCCAGguggUGCAGCgaguaguuGCUGc- -3'
miRNA:   3'- -CCGGCGa--CCGGUUa---GCGUUG--------UGACuc -5'
3786 5' -55.2 NC_001650.1 + 138197 0.69 0.843299
Target:  5'- cGGCCGCU-GUCAAUCaGCGAUcCUGGc -3'
miRNA:   3'- -CCGGCGAcCGGUUAG-CGUUGuGACUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.