miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3789 3' -57.4 NC_001650.1 + 99014 0.66 0.887094
Target:  5'- gACUaUGGGCCAGGGCUgaaaGAGCUUCUuGCu -3'
miRNA:   3'- -UGG-ACUCGGUUUCGGg---UUCGGAGG-CG- -5'
3789 3' -57.4 NC_001650.1 + 79084 0.66 0.887094
Target:  5'- gGCCccGGGCCu-GGCuCCGGGCgCggCCGCu -3'
miRNA:   3'- -UGGa-CUCGGuuUCG-GGUUCG-Ga-GGCG- -5'
3789 3' -57.4 NC_001650.1 + 27767 0.66 0.887094
Target:  5'- cACCgcGGCCAAcacGCCCAugugcgAGCUgugCCGCg -3'
miRNA:   3'- -UGGacUCGGUUu--CGGGU------UCGGa--GGCG- -5'
3789 3' -57.4 NC_001650.1 + 36406 0.66 0.887094
Target:  5'- --gUGGGCUAGggGGCCCGGGCg-UCGCg -3'
miRNA:   3'- uggACUCGGUU--UCGGGUUCGgaGGCG- -5'
3789 3' -57.4 NC_001650.1 + 111886 0.66 0.887094
Target:  5'- uGCCUGgAGCCcaacAAGCCCuacGCgUCCa- -3'
miRNA:   3'- -UGGAC-UCGGu---UUCGGGuu-CGgAGGcg -5'
3789 3' -57.4 NC_001650.1 + 108635 0.66 0.887094
Target:  5'- uCCUG-GCCGAccaCCC-GGCCUCgCGCc -3'
miRNA:   3'- uGGACuCGGUUuc-GGGuUCGGAG-GCG- -5'
3789 3' -57.4 NC_001650.1 + 130490 0.66 0.887094
Target:  5'- aAUCUGAuugGuCCAGAGCCCucucGGCCg-CGCu -3'
miRNA:   3'- -UGGACU---C-GGUUUCGGGu---UCGGagGCG- -5'
3789 3' -57.4 NC_001650.1 + 152938 0.66 0.887094
Target:  5'- cCCgucGGGCUugaGGGGCuCCGcgucggcaauGGCCUCCGCc -3'
miRNA:   3'- uGGa--CUCGG---UUUCG-GGU----------UCGGAGGCG- -5'
3789 3' -57.4 NC_001650.1 + 133314 0.66 0.887094
Target:  5'- cCCUGGGUCAcguGCaCCuugcagAAGCCcCCGCg -3'
miRNA:   3'- uGGACUCGGUuu-CG-GG------UUCGGaGGCG- -5'
3789 3' -57.4 NC_001650.1 + 50726 0.66 0.880208
Target:  5'- cGCCUuuGCCcucGCCCGcGCUUUCGCu -3'
miRNA:   3'- -UGGAcuCGGuuuCGGGUuCGGAGGCG- -5'
3789 3' -57.4 NC_001650.1 + 90254 0.66 0.880208
Target:  5'- cACCacgGGGCaggugaAGAGCCUGgcgucGGCCUCgGCg -3'
miRNA:   3'- -UGGa--CUCGg-----UUUCGGGU-----UCGGAGgCG- -5'
3789 3' -57.4 NC_001650.1 + 109344 0.66 0.880208
Target:  5'- gACCUGcuGGagaucuGCCCGGGCCUCC-Cg -3'
miRNA:   3'- -UGGAC--UCgguuu-CGGGUUCGGAGGcG- -5'
3789 3' -57.4 NC_001650.1 + 154510 0.66 0.880208
Target:  5'- uCCUGcuGUgGGuGaCCCAGGCaCUCCGCg -3'
miRNA:   3'- uGGACu-CGgUUuC-GGGUUCG-GAGGCG- -5'
3789 3' -57.4 NC_001650.1 + 3055 0.66 0.880208
Target:  5'- -gCUGAcGUCGccGGGCCCGgaGGCCUCC-Ca -3'
miRNA:   3'- ugGACU-CGGU--UUCGGGU--UCGGAGGcG- -5'
3789 3' -57.4 NC_001650.1 + 166040 0.66 0.880208
Target:  5'- aACCuUGAGC---AGCagAAGCCUCUGCc -3'
miRNA:   3'- -UGG-ACUCGguuUCGggUUCGGAGGCG- -5'
3789 3' -57.4 NC_001650.1 + 169762 0.66 0.880208
Target:  5'- -gCUGAcGUCGccGGGCCCGgaGGCCUCC-Ca -3'
miRNA:   3'- ugGACU-CGGU--UUCGGGU--UCGGAGGcG- -5'
3789 3' -57.4 NC_001650.1 + 72868 0.66 0.880208
Target:  5'- -aCUGGGCuCAAacuuGGCCCucaggaugggcaGGGCCUCCa- -3'
miRNA:   3'- ugGACUCG-GUU----UCGGG------------UUCGGAGGcg -5'
3789 3' -57.4 NC_001650.1 + 157137 0.66 0.879507
Target:  5'- cGCCUGGGCC-AGGCUgguguagUggGCCUCg-- -3'
miRNA:   3'- -UGGACUCGGuUUCGG-------GuuCGGAGgcg -5'
3789 3' -57.4 NC_001650.1 + 60098 0.66 0.873106
Target:  5'- cGCCgaGGGUCu-GGCCCGAcccGCCgcCCGCg -3'
miRNA:   3'- -UGGa-CUCGGuuUCGGGUU---CGGa-GGCG- -5'
3789 3' -57.4 NC_001650.1 + 12780 0.66 0.873106
Target:  5'- cCCcGAGCC-GGGCacggaGGGCCUCCGg -3'
miRNA:   3'- uGGaCUCGGuUUCGgg---UUCGGAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.