miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3789 5' -58.4 NC_001650.1 + 52618 0.66 0.834542
Target:  5'- gGGGCCAcuGGCCCGGGgguCCUCgGCacCUCGc -3'
miRNA:   3'- -CUCGGUu-UCGGGUUC---GGAGgCG--GAGU- -5'
3789 5' -58.4 NC_001650.1 + 131536 0.66 0.826262
Target:  5'- cGGCCcgaGAGGCCCAAGUCcCUGCUggggCGa -3'
miRNA:   3'- cUCGG---UUUCGGGUUCGGaGGCGGa---GU- -5'
3789 5' -58.4 NC_001650.1 + 155336 0.66 0.826262
Target:  5'- uGAGCCAGaggcucucgggcAGCUCGgaGGCgUUgGCCUCGa -3'
miRNA:   3'- -CUCGGUU------------UCGGGU--UCGgAGgCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 92633 0.66 0.826262
Target:  5'- gGAGCCccuccaccuGGCCCuuauCC-CCGCCUCGa -3'
miRNA:   3'- -CUCGGuu-------UCGGGuuc-GGaGGCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 152943 0.66 0.826262
Target:  5'- cGGGCUugaGGGGCuCCGcgucggcaauGGCCUCCGCCc-- -3'
miRNA:   3'- -CUCGG---UUUCG-GGU----------UCGGAGGCGGagu -5'
3789 5' -58.4 NC_001650.1 + 147494 0.66 0.826262
Target:  5'- -cGCC-AAGCCCAguGGCCcgUCGCCg-- -3'
miRNA:   3'- cuCGGuUUCGGGU--UCGGa-GGCGGagu -5'
3789 5' -58.4 NC_001650.1 + 16435 0.66 0.81781
Target:  5'- aAGCCAAugggGGCCCGggggugGGCCcaaCCGCUUUAc -3'
miRNA:   3'- cUCGGUU----UCGGGU------UCGGa--GGCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 183142 0.66 0.81781
Target:  5'- aAGCCAAugggGGCCCGggggugGGCCcaaCCGCUUUAc -3'
miRNA:   3'- cUCGGUU----UCGGGU------UCGGa--GGCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 161893 0.66 0.81781
Target:  5'- cAGCaCGuuGCCCcAGCCgaaggugcCCGCCUCc -3'
miRNA:   3'- cUCG-GUuuCGGGuUCGGa-------GGCGGAGu -5'
3789 5' -58.4 NC_001650.1 + 69047 0.66 0.81781
Target:  5'- -cGUgGAAGCCCucGGCCUCCagggagaCCUCGc -3'
miRNA:   3'- cuCGgUUUCGGGu-UCGGAGGc------GGAGU- -5'
3789 5' -58.4 NC_001650.1 + 133097 0.66 0.81781
Target:  5'- cGAGCCAGgugcagGGCCCAagggaggaaguuGGUUUCuCGCCUg- -3'
miRNA:   3'- -CUCGGUU------UCGGGU------------UCGGAG-GCGGAgu -5'
3789 5' -58.4 NC_001650.1 + 116280 0.66 0.81781
Target:  5'- cAGCCAGugcAGCUUGgcGGCCagCGCCUCGu -3'
miRNA:   3'- cUCGGUU---UCGGGU--UCGGagGCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 115417 0.66 0.81781
Target:  5'- cGAGCgAGGGCCCcGGCCUgCC-CCa-- -3'
miRNA:   3'- -CUCGgUUUCGGGuUCGGA-GGcGGagu -5'
3789 5' -58.4 NC_001650.1 + 121905 0.66 0.81781
Target:  5'- uGGCCuGGGCUCAuuuuugGGUCUCCcCCUCGg -3'
miRNA:   3'- cUCGGuUUCGGGU------UCGGAGGcGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 48980 0.66 0.809192
Target:  5'- uGAGCU-GGGCCCGGGCCUguaCUGCUcCAg -3'
miRNA:   3'- -CUCGGuUUCGGGUUCGGA---GGCGGaGU- -5'
3789 5' -58.4 NC_001650.1 + 106376 0.66 0.809192
Target:  5'- -uGCCccugcGAGUCCAGGUUgcCCGCCUCGc -3'
miRNA:   3'- cuCGGu----UUCGGGUUCGGa-GGCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 90176 0.66 0.809192
Target:  5'- cAGCCAcucggugaccguGAGCCCcGGCagguucaCCGCCUCc -3'
miRNA:   3'- cUCGGU------------UUCGGGuUCGga-----GGCGGAGu -5'
3789 5' -58.4 NC_001650.1 + 133264 0.66 0.800417
Target:  5'- gGGGCCGcagAGGCCgAAGCCcCCGCg--- -3'
miRNA:   3'- -CUCGGU---UUCGGgUUCGGaGGCGgagu -5'
3789 5' -58.4 NC_001650.1 + 130496 0.66 0.800417
Target:  5'- aGGCCcugcuGCCCcuguGCC-CCGCCUCc -3'
miRNA:   3'- cUCGGuuu--CGGGuu--CGGaGGCGGAGu -5'
3789 5' -58.4 NC_001650.1 + 157019 0.66 0.800417
Target:  5'- aGAGCCcccacGCCCu-GCUgCUGCCUCAc -3'
miRNA:   3'- -CUCGGuuu--CGGGuuCGGaGGCGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.