miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3789 5' -58.4 NC_001650.1 + 8216 0.67 0.776927
Target:  5'- uGGCCuAGGCCCuccaccggccaauGCCUCCcCCUCu -3'
miRNA:   3'- cUCGGuUUCGGGuu-----------CGGAGGcGGAGu -5'
3789 5' -58.4 NC_001650.1 + 101777 0.68 0.725581
Target:  5'- aGGGaCCccGAGCCCAGGUacagcCCGCCUCu -3'
miRNA:   3'- -CUC-GGu-UUCGGGUUCGga---GGCGGAGu -5'
3789 5' -58.4 NC_001650.1 + 88212 0.68 0.725581
Target:  5'- -cGCCucGGCCgGcgaGGCCUCCGCgUUCGa -3'
miRNA:   3'- cuCGGuuUCGGgU---UCGGAGGCG-GAGU- -5'
3789 5' -58.4 NC_001650.1 + 76968 0.67 0.744941
Target:  5'- -uGCCcguGCCCgAGGCCUCCGUgUUg -3'
miRNA:   3'- cuCGGuuuCGGG-UUCGGAGGCGgAGu -5'
3789 5' -58.4 NC_001650.1 + 138532 0.67 0.744941
Target:  5'- aAGCU--AGCCUGAGCCUCUauCCUCAc -3'
miRNA:   3'- cUCGGuuUCGGGUUCGGAGGc-GGAGU- -5'
3789 5' -58.4 NC_001650.1 + 127135 0.67 0.753531
Target:  5'- gGAGaCCAccGGGCCCcgGAGCCUgcgaaccCCGUCUCu -3'
miRNA:   3'- -CUC-GGU--UUCGGG--UUCGGA-------GGCGGAGu -5'
3789 5' -58.4 NC_001650.1 + 60415 0.67 0.763914
Target:  5'- --uCCAGGGCCuUGAGCC-CCGuCCUCAg -3'
miRNA:   3'- cucGGUUUCGG-GUUCGGaGGC-GGAGU- -5'
3789 5' -58.4 NC_001650.1 + 26730 0.67 0.77045
Target:  5'- -cGCC-GGGCCC-GGCCUggaggggcugugcgCCGCCUCc -3'
miRNA:   3'- cuCGGuUUCGGGuUCGGA--------------GGCGGAGu -5'
3789 5' -58.4 NC_001650.1 + 85244 0.67 0.773233
Target:  5'- --cCCucAGCCCccuGGCCUUCGgCCUCAg -3'
miRNA:   3'- cucGGuuUCGGGu--UCGGAGGC-GGAGU- -5'
3789 5' -58.4 NC_001650.1 + 18835 0.69 0.665893
Target:  5'- cGGCCucGGCCauuCAGGCCUggaUGCCUCAg -3'
miRNA:   3'- cUCGGuuUCGG---GUUCGGAg--GCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 22482 0.69 0.635572
Target:  5'- gGAGCgCGGcgccGCCCGgcaugGGCC-CCGCCUCGa -3'
miRNA:   3'- -CUCG-GUUu---CGGGU-----UCGGaGGCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 25065 0.7 0.615332
Target:  5'- uGGCCAGcgGGCCCGccauGGCCUaccCCGCCa-- -3'
miRNA:   3'- cUCGGUU--UCGGGU----UCGGA---GGCGGagu -5'
3789 5' -58.4 NC_001650.1 + 121386 0.78 0.209266
Target:  5'- uGGCCAucGCCCcGGCCgggggcgCCGCCUCGc -3'
miRNA:   3'- cUCGGUuuCGGGuUCGGa------GGCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 131630 0.75 0.349577
Target:  5'- uGGCCAcccGGCCCGAGCUggcggCCGCCUg- -3'
miRNA:   3'- cUCGGUu--UCGGGUUCGGa----GGCGGAgu -5'
3789 5' -58.4 NC_001650.1 + 95002 0.71 0.514975
Target:  5'- uAGCCAAGGCCCAgggcaugucccugAGCCggguggCCGUCUg- -3'
miRNA:   3'- cUCGGUUUCGGGU-------------UCGGa-----GGCGGAgu -5'
3789 5' -58.4 NC_001650.1 + 4790 0.71 0.534429
Target:  5'- aGGCCGGGGCUCGagggguaGGCCUCCGgUUCu -3'
miRNA:   3'- cUCGGUUUCGGGU-------UCGGAGGCgGAGu -5'
3789 5' -58.4 NC_001650.1 + 171497 0.71 0.534429
Target:  5'- aGGCCGGGGCUCGagggguaGGCCUCCGgUUCu -3'
miRNA:   3'- cUCGGUUUCGGGU-------UCGGAGGCgGAGu -5'
3789 5' -58.4 NC_001650.1 + 67711 0.7 0.585081
Target:  5'- cAGCUGAGGCCCAuGGuCCUCgagaugUGCCUCAg -3'
miRNA:   3'- cUCGGUUUCGGGU-UC-GGAG------GCGGAGU- -5'
3789 5' -58.4 NC_001650.1 + 156572 0.7 0.585081
Target:  5'- aGAGCUGAAGgCCAGGCCgaCGCC-CAg -3'
miRNA:   3'- -CUCGGUUUCgGGUUCGGagGCGGaGU- -5'
3789 5' -58.4 NC_001650.1 + 143051 0.7 0.595141
Target:  5'- cGGGCCAcgcggaGGGCgCCgAGGCgCUCCGCCUg- -3'
miRNA:   3'- -CUCGGU------UUCG-GG-UUCG-GAGGCGGAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.