miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
379 3' -57.8 AC_000011.1 + 22917 0.66 0.429026
Target:  5'- --aGCAGCcgcGGCCAGGGGGUcGCu--- -3'
miRNA:   3'- uugCGUCGc--UCGGUCCCUCA-CGuucg -5'
379 3' -57.8 AC_000011.1 + 8133 0.66 0.419203
Target:  5'- cAUGCuGaCGAGCCcgcgcGGGAG-GCAGGUc -3'
miRNA:   3'- uUGCGuC-GCUCGGu----CCCUCaCGUUCG- -5'
379 3' -57.8 AC_000011.1 + 15349 0.66 0.399974
Target:  5'- uGCGCAGC-AGuauCCGGGGAGUcCAGcGCg -3'
miRNA:   3'- uUGCGUCGcUC---GGUCCCUCAcGUU-CG- -5'
379 3' -57.8 AC_000011.1 + 9274 0.66 0.399974
Target:  5'- aGGCgGCAGUGguGGCgGGGGAGgggGCcuGCg -3'
miRNA:   3'- -UUG-CGUCGC--UCGgUCCCUCa--CGuuCG- -5'
379 3' -57.8 AC_000011.1 + 6387 0.66 0.390573
Target:  5'- -uUGC-GCGAGCagaAGGGGG-GCAGGg -3'
miRNA:   3'- uuGCGuCGCUCGg--UCCCUCaCGUUCg -5'
379 3' -57.8 AC_000011.1 + 23831 0.66 0.390573
Target:  5'- aGGCGCGGCuGAGCUccuccacgcugaGGGGcaccucGGUGCGgucgAGCa -3'
miRNA:   3'- -UUGCGUCG-CUCGG------------UCCC------UCACGU----UCG- -5'
379 3' -57.8 AC_000011.1 + 25198 0.66 0.381317
Target:  5'- cGCuCAGC-AGCUGGGGGuUGCAGGCc -3'
miRNA:   3'- uUGcGUCGcUCGGUCCCUcACGUUCG- -5'
379 3' -57.8 AC_000011.1 + 18080 0.66 0.381317
Target:  5'- --aGgGGCGggaaGGCUGGGGAGgagGCAAGUc -3'
miRNA:   3'- uugCgUCGC----UCGGUCCCUCa--CGUUCG- -5'
379 3' -57.8 AC_000011.1 + 21128 0.67 0.345785
Target:  5'- gGugGUGGCGuuaccGGCCgagaAGGGGGUGCGcaGGUa -3'
miRNA:   3'- -UugCGUCGC-----UCGG----UCCCUCACGU--UCG- -5'
379 3' -57.8 AC_000011.1 + 15739 0.68 0.312692
Target:  5'- gGGCGCGGCG-GC--GGGGGUGUAGuuGCg -3'
miRNA:   3'- -UUGCGUCGCuCGguCCCUCACGUU--CG- -5'
379 3' -57.8 AC_000011.1 + 18136 0.69 0.274778
Target:  5'- gAACaGCAucGUGGGUCuGGGAGUGCAgagugugaAGCg -3'
miRNA:   3'- -UUG-CGU--CGCUCGGuCCCUCACGU--------UCG- -5'
379 3' -57.8 AC_000011.1 + 3106 0.69 0.253848
Target:  5'- -gUGCucgaacuCGGGCCAGGGcuUGCGAGCa -3'
miRNA:   3'- uuGCGuc-----GCUCGGUCCCucACGUUCG- -5'
379 3' -57.8 AC_000011.1 + 16562 0.7 0.215931
Target:  5'- -cCGCGGCGccgcGCCGGGG-GUuCAAGCg -3'
miRNA:   3'- uuGCGUCGCu---CGGUCCCuCAcGUUCG- -5'
379 3' -57.8 AC_000011.1 + 7095 0.71 0.188138
Target:  5'- aGGCGCAGC-AGCCcuucuccacGGGGAGggcGUAGGCc -3'
miRNA:   3'- -UUGCGUCGcUCGG---------UCCCUCa--CGUUCG- -5'
379 3' -57.8 AC_000011.1 + 21470 0.74 0.115947
Target:  5'- uGACGCAGCGguccucgguGGCCAGGGcGcUGCGGcGCa -3'
miRNA:   3'- -UUGCGUCGC---------UCGGUCCCuC-ACGUU-CG- -5'
379 3' -57.8 AC_000011.1 + 972 1.1 0.000212
Target:  5'- gAACGCAGCGAGCCAGGGAGUGCAAGCg -3'
miRNA:   3'- -UUGCGUCGCUCGGUCCCUCACGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.