miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3793 3' -55.8 NC_001650.1 + 32170 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32392 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32452 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32356 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32320 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32248 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32284 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32206 1.08 0.003777
Target:  5'- cCAGAUCCAGGACCAGGACCAGAUCCAg -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 32428 0.91 0.05092
Target:  5'- cCAGAUCCAGGACCAGGACCAGGa--- -3'
miRNA:   3'- -GUCUAGGUCCUGGUCCUGGUCUaggu -5'
3793 3' -55.8 NC_001650.1 + 62428 0.8 0.26392
Target:  5'- uCGGGUCaAGGACCAGGuccaaguCCAGGUCCAg -3'
miRNA:   3'- -GUCUAGgUCCUGGUCCu------GGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 49094 0.8 0.26392
Target:  5'- cCAGAaCCAGGACCuGGACCAG-UCUAg -3'
miRNA:   3'- -GUCUaGGUCCUGGuCCUGGUCuAGGU- -5'
3793 3' -55.8 NC_001650.1 + 140114 0.78 0.347476
Target:  5'- gGGGUCCAGGAagCAGGaagcucacGCCGGGUCCAa -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC--------UGGUCUAGGU- -5'
3793 3' -55.8 NC_001650.1 + 124462 0.75 0.466651
Target:  5'- aCAGAUCC-GGACCuGGcCCAGAgCCAg -3'
miRNA:   3'- -GUCUAGGuCCUGGuCCuGGUCUaGGU- -5'
3793 3' -55.8 NC_001650.1 + 150244 0.75 0.504432
Target:  5'- uGGAUCCGGG-CCAGGGUCAGAuuuugaUCCAa -3'
miRNA:   3'- gUCUAGGUCCuGGUCCUGGUCU------AGGU- -5'
3793 3' -55.8 NC_001650.1 + 111740 0.74 0.543473
Target:  5'- gUAGG-CgAGGGCCAGGGCCAGGUUg- -3'
miRNA:   3'- -GUCUaGgUCCUGGUCCUGGUCUAGgu -5'
3793 3' -55.8 NC_001650.1 + 67179 0.73 0.603675
Target:  5'- uCAGAUCCgcAGGGCgGcGGCCAGGUCCc -3'
miRNA:   3'- -GUCUAGG--UCCUGgUcCUGGUCUAGGu -5'
3793 3' -55.8 NC_001650.1 + 139877 0.72 0.644311
Target:  5'- gGGGUCCAGGAagCAGGaaGCCAGGcuagggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCC--UGGUCU------AGGU- -5'
3793 3' -55.8 NC_001650.1 + 139924 0.72 0.654466
Target:  5'- gGGGUCCAGGAagCAGGAagcaauCCAGGggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5'
3793 3' -55.8 NC_001650.1 + 140006 0.72 0.654466
Target:  5'- gGGGUCCAGGAagCAGGAagcaaaCCAGGggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5'
3793 3' -55.8 NC_001650.1 + 140060 0.72 0.654466
Target:  5'- gGGGUCCAGGAagCAGGAagcaauCCAGGggUCCAg -3'
miRNA:   3'- gUCUAGGUCCUg-GUCCU------GGUCU--AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.